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Protein Overview: rdp1

General Information:
Name(s) found: rdp1 / SPAC6F12.09 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • RNA-directed RNA polymerase Rdp1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1215 amino acids

    Gene Ontology:
    Cellular Component: mating-type region heterochromatin [IDALink to PubMed article]
    nuclear RNA-directed RNA polymerase complex [IDALink to PubMed article]
    nucleus [IDALink to PubMed articleLink to PubMed article]
    nuclear telomeric heterochromatin [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    centromeric heterochromatin [IDALink to PubMed article]
    Biological Process: regulation of histone methylation [IMPLink to PubMed article]
    meiotic telomere clustering [IMPLink to PubMed article]
    chromatin silencing at centromere [IMPLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    posttranscriptional gene silencing [IMPLink to PubMed article]
    RNA interference [IMPLink to PubMed article]
    cellular protein localization [IGILink to PubMed articleLink to PubMed article]
    chromatin silencing by small RNA [IDALink to PubMed article]
    Molecular Function: RNA binding [IEA]
    RNA-directed RNA polymerase activity [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSLNDFIS VKLKRYSRES PWERLRVPYR NKKQKKWASV HNNEAQLHSA NKRNDNCLIQ  60
   61 RSSTWRLGDM ITLVIKDIPV TWLSNEGGKL YNLWEPLHDY GTIEFMKINE PLNGQTSTTA 120
  121 IVQFAPPPKV PFWEPNGKIN VKGVDLAVQI DITAHRSHIS RQVFSKNSFR SDQLVKIPLS 180
  181 SFKLGQVYDE RIVPLFGVDC GITVTESNLL VYFNFKKLCV LFDASFDKQI ETFRLDFDFH 240
  241 SIIGDVGTDY YDDHISLVFR FRFSPLIFRK SKNATESRVQ TFWTASHLWR RHYDILPFNV 300
  301 SPTTASPIEL LNCHNAPIGR CNVLVLSFSI RDESDKDDIA FLLHNLEKFN LKSQLDKVVF 360
  361 HLVPDYKHRC SLINDKEIEE EIAYLLQACL SKNLLSEIDL PIILANLKKL SKERAKKFLR 420
  421 LILTSKTALI NPSELDFTKS FVFYDLSSAS SIHIKKLYVT PTTLRIVEDS LEAGNRVIRN 480
  481 FKDFANRFMR VQITDEYYKQ KIRGGSDGFR NEKLYSRIQQ LLTYGIKVGN QIYEFLAFGN 540
  541 SQLREHGAYF FASGSDLNAK QIREWMGDFS EINSVSKYAA RMGQCFSTTK EINRFCVDIS 600
  601 LQDDIVRNNH CFTDGVGMAS LSVIRRLSLE VKNHDMFPSA FQFRMGGYKG VLSLAPPTKL 660
  661 EYHQGNLVFP RRSQDKFKSF HSTLEVIKIS RFSNAHLNMQ LITLLEGLGV EKTVFLELTR 720
  721 SQLSKMNESI NSKQKSILML RDNVDEYHST LIIADFIQAG FLERDDAFTE NLLNLYYEWV 780
  781 LRLIKEKQKV SVPKGAYLLG VADETGTLKG HYDDAVLSVP EIFIQITDTS TSFGSYSTGK 840
  841 LKTRVIVGLC IVARNPSLHP GDVRVCKAVR CDELMHLKNV IVFPTTGDRS IPAMCSGGDL 900
  901 DGDEYTVIWD QRLLPKIVNY PPLLESSPKK SIDFLEGKPL IDSVKEFFVN YIKYDSLGLI 960
  961 SNAWKAWAHD HDNNPEGIFG NVCLELAEMH SKAVDFAKSG VACKMQAKYH PKRYPDFMQK1020
 1021 TKTRSFRSET AVGKIFRYAA RFQRESGRPA TYNPIMNTVY DPCMKLPRFK TEYLNVAEEV1080
 1081 KKHYDNDLRS IMARFDISTE YEVYTAFILF KDDLAKTVNE YGLREEVSFQ FDLLKKKYTQ1140
 1141 EYLEKCALSN QSAFDSSEYE ERINSAVAAT YDVTYDQRVK SVGNGTTEVL ISFPYLFSSR1200
 1201 LCQLSRKAML TANNF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] FFAS03 2.11 No description for 2f3jA was found.
    2 View Details [224..450] deduced N/A No confident structure predictions are available.
    3 View Details [451..1042] PSI-BLAST 110.0 No description for 2j7nA was found.
    4 View Details [1043..1215] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle