| Protein: | rdp1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1215 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rdp1.
| Description | E-value | Query Range |
Subject Range |
|
|
1379.0 | [0..16] | [1205..113] |
|
|
1369.0 | [0..14] | [1205..85] |
|
|
1302.0 | [0..12] | [1205..9] |
|
|
1252.0 | [0..36] | [1204..566] |
|
|
1248.0 | [0..62] | [1206..96] |
|
|
1185.0 | [0..143] | [1208..30] |
|
|
1179.0 | [0..140] | [1208..27] |
|
|
1116.0 | [0..72] | [1210..5] |
|
|
1115.0 | [0..143] | [1210..56] |
|
Region A: Residues: [1-223] |
1 11 21 31 41 51
| | | | | |
1 MAVSLNDFIS VKLKRYSRES PWERLRVPYR NKKQKKWASV HNNEAQLHSA NKRNDNCLIQ 60
61 RSSTWRLGDM ITLVIKDIPV TWLSNEGGKL YNLWEPLHDY GTIEFMKINE PLNGQTSTTA 120
121 IVQFAPPPKV PFWEPNGKIN VKGVDLAVQI DITAHRSHIS RQVFSKNSFR SDQLVKIPLS 180
181 SFKLGQVYDE RIVPLFGVDC GITVTESNLL VYFNFKKLCV LFD
|
| Detection Method: |  |
| Confidence: | 2.11 |
| Match: | 2f3jA |
| Description: | No description for 2f3jA was found. |
|
Region A: Residues: [224-450] |
1 11 21 31 41 51
| | | | | |
1 ASFDKQIETF RLDFDFHSII GDVGTDYYDD HISLVFRFRF SPLIFRKSKN ATESRVQTFW 60
61 TASHLWRRHY DILPFNVSPT TASPIELLNC HNAPIGRCNV LVLSFSIRDE SDKDDIAFLL 120
121 HNLEKFNLKS QLDKVVFHLV PDYKHRCSLI NDKEIEEEIA YLLQACLSKN LLSEIDLPII 180
181 LANLKKLSKE RAKKFLRLIL TSKTALINPS ELDFTKSFVF YDLSSAS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [451-1042] |
1 11 21 31 41 51
| | | | | |
1 SIHIKKLYVT PTTLRIVEDS LEAGNRVIRN FKDFANRFMR VQITDEYYKQ KIRGGSDGFR 60
61 NEKLYSRIQQ LLTYGIKVGN QIYEFLAFGN SQLREHGAYF FASGSDLNAK QIREWMGDFS 120
121 EINSVSKYAA RMGQCFSTTK EINRFCVDIS LQDDIVRNNH CFTDGVGMAS LSVIRRLSLE 180
181 VKNHDMFPSA FQFRMGGYKG VLSLAPPTKL EYHQGNLVFP RRSQDKFKSF HSTLEVIKIS 240
241 RFSNAHLNMQ LITLLEGLGV EKTVFLELTR SQLSKMNESI NSKQKSILML RDNVDEYHST 300
301 LIIADFIQAG FLERDDAFTE NLLNLYYEWV LRLIKEKQKV SVPKGAYLLG VADETGTLKG 360
361 HYDDAVLSVP EIFIQITDTS TSFGSYSTGK LKTRVIVGLC IVARNPSLHP GDVRVCKAVR 420
421 CDELMHLKNV IVFPTTGDRS IPAMCSGGDL DGDEYTVIWD QRLLPKIVNY PPLLESSPKK 480
481 SIDFLEGKPL IDSVKEFFVN YIKYDSLGLI SNAWKAWAHD HDNNPEGIFG NVCLELAEMH 540
541 SKAVDFAKSG VACKMQAKYH PKRYPDFMQK TKTRSFRSET AVGKIFRYAA RF
|
| Detection Method: | |
| Confidence: | 110.0 |
| Match: | 2j7nA |
| Description: | No description for 2j7nA was found. |
|
Region A: Residues: [1043-1215] |
1 11 21 31 41 51
| | | | | |
1 QRESGRPATY NPIMNTVYDP CMKLPRFKTE YLNVAEEVKK HYDNDLRSIM ARFDISTEYE 60
61 VYTAFILFKD DLAKTVNEYG LREEVSFQFD LLKKKYTQEY LEKCALSNQS AFDSSEYEER 120
121 INSAVAATYD VTYDQRVKSV GNGTTEVLIS FPYLFSSRLC QLSRKAMLTA NNF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
