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Protein Overview: SPBC1604.18c

General Information:
Name(s) found: SPBC1604.18c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • vacuolar sorting protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 449 amino acids

    Gene Ontology:
    Cellular Component: ESCRT III complex [ISSLink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway [ICLink to PubMed article]
    late endosome to vacuole transport [ISSLink to PubMed article]
    intracellular protein transport [IC]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKEKVNAL EFSVNKGIFT KTRLKSLYSD FTSLFIKNPE GFLANVNTWR EAIETSAWSG  60
   61 KLNSRIILVF DETFESAFSS PALGRPLSLG AVAAYWIQQG VWLRKQDFLN DCKKGNLVRE 120
  121 DGFSIFSILR WSFQKLGFQN QASSILSNRS PSGQYVIRKN IEKLACLVHN EAMRRCSSYT 180
  181 SAIYTWDFFQ DTFGSLYWEE GKLNKDEMEC LLNWMCYQKH VLIFDSKIIK FLPNSQIDAQ 240
  241 LASIDKSIDG SVADLIQARA SIAQRSEFLN EELEQLSQVL NQAVKKGEKT IAITYLRRKK 300
  301 ILSKDLERKV SSRLQLDTII SNIDNAVDNK ILLIAMSSGS EALDAILAQM GGTEKVEDVL 360
  361 ENVNDTLARS EEIDATIQTY NPQNIDLEDE AVEKEWQDLV AEEQKVEDIV STLGNVSLKT 420
  421 PSDTFTLTNT DSDKKTSKPE KIQAELVEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] MSA 1.054978 View MSA. No confident structure predictions are available.
    2 View Details [141..449] PSI-BLAST 3.522879 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle