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Protein Overview: ysh1

General Information:
Name(s) found: ysh1 / SPAC17G6.16c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 775 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    mRNA cleavage and polyadenylation specificity factor complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: mRNA polyadenylation [ICLink to PubMed article]
    mRNA cleavage [ICLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    endoribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKRKEFDED APVDPSVSLE FTIFYKGLLS NQCQDLLEFI NLGAGNEVGR SCHVIQYKGK  60
   61 TVMLDAGVHP AYTGLSALPF FDEFDLSTVD VLLISHFHLD HVASLPYVMQ KTNFRGRVFM 120
  121 THPTKAVCKW LLSDYVKVSN VGMEDQLYDE KDLLAAFDRI EAVDYHSTIE VEGIKFTPYH 180
  181 AGHVLGACMY FVEMAGVNIL FTGDYSREED RHLHVAEVPP KRPDVLITES TYGTASHQPR 240
  241 LEKEARLLNI IHSTIRNGGR VLMPVFALGR AQELLLILDE YWNNHLDLRS VPIYYASSLA 300
  301 RKCMAIFQTY VNMMNDNIRK IFAERNPFIF RFVKSLRNLE KFDDIGPSVI LASPGMLQNG 360
  361 VSRTLLERWA PDPRNTLLLT GYSVEGTMAK QITNEPIEIV SLSGQKIPRR MAVEELSFAA 420
  421 HVDYLQNSEF IDLVNADHII LVHGEQTNMG RLKSALASKF HNRKVDVKVY TPRNCVPLYL 480
  481 PFKGERLVRA LGKVAVHKPK EGDIMSGILI QKDANYKLMS AEDLRDFSDL TTTVLTQKQV 540
  541 IPFFSSMELA NFHLKQMFGY VKQSKTKAGQ PQYTVMDAIT LTLIQEHKLA LEWVGNIMND 600
  601 TIADSVITIL LGIESSPASV KLTSHKCNHL HSHLDKPPKV SKEEDRIKKL MMFLDNQFGE 660
  661 SMTKTEKGVE IKFEKYEASI DFSTMKVECS NEALRSRVVH VLSRAINTIL PFSEASQNDV 720
  721 SEDDFENEES DDDKIFEQQT KIEDDVKNEN KTEPVEEQKS EEKNEQPNLK KEELS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..443] PSI-BLAST 32.39794 Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain
    2 View Details [444..613] MSA 2.276978 View MSA. No confident structure predictions are available.
    3 View Details [614..775] MSA 1.109975 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.32880196921974 bayes_pls_golite062009
  • binding
    		•  1.97803450114143 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.66507162669272 bayes_pls_golite062009
  • RNA binding
    		•  1.48455378212673 bayes_pls_golite062009
  • catalytic activity
    		•  0.941400907161877 bayes_pls_golite062009
  • protein binding
    		•  0.380466845099285 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0852528568191628 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle