| Protein: | ysh1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 775 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ysh1.
| Description | E-value | Query Range |
Subject Range |
|
|
535.0 | [0..34] | [712..9] |
|
|
534.0 | [0..34] | [711..9] |
|
|
533.0 | [0..34] | [712..9] |
|
|
533.0 | [0..34] | [712..9] |
|
|
531.0 | [0..34] | [712..9] |
|
|
531.0 | [0..34] | [712..9] |
|
Region A: Residues: [1-443] |
1 11 21 31 41 51
| | | | | |
1 MSKRKEFDED APVDPSVSLE FTIFYKGLLS NQCQDLLEFI NLGAGNEVGR SCHVIQYKGK 60
61 TVMLDAGVHP AYTGLSALPF FDEFDLSTVD VLLISHFHLD HVASLPYVMQ KTNFRGRVFM 120
121 THPTKAVCKW LLSDYVKVSN VGMEDQLYDE KDLLAAFDRI EAVDYHSTIE VEGIKFTPYH 180
181 AGHVLGACMY FVEMAGVNIL FTGDYSREED RHLHVAEVPP KRPDVLITES TYGTASHQPR 240
241 LEKEARLLNI IHSTIRNGGR VLMPVFALGR AQELLLILDE YWNNHLDLRS VPIYYASSLA 300
301 RKCMAIFQTY VNMMNDNIRK IFAERNPFIF RFVKSLRNLE KFDDIGPSVI LASPGMLQNG 360
361 VSRTLLERWA PDPRNTLLLT GYSVEGTMAK QITNEPIEIV SLSGQKIPRR MAVEELSFAA 420
421 HVDYLQNSEF IDLVNADHII LVH
|
| Detection Method: |  |
| Confidence: | 32.39794 |
| Match: | 1e5dA |
| Description: | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain; Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.32880196921974 | bayes_pls_golite062009 |
| binding | 1.97803450114143 | bayes_pls_golite062009 |
| nucleic acid binding | 1.66507162669272 | bayes_pls_golite062009 |
| RNA binding | 1.48455378212673 | bayes_pls_golite062009 |
| catalytic activity | 0.941400907161877 | bayes_pls_golite062009 |
| protein binding | 0.380466845099285 | bayes_pls_golite062009 |
| transcription factor binding | 0.0852528568191628 | bayes_pls_golite062009 |
|
Region A: Residues: [444-613] |
1 11 21 31 41 51
| | | | | |
1 GEQTNMGRLK SALASKFHNR KVDVKVYTPR NCVPLYLPFK GERLVRALGK VAVHKPKEGD 60
61 IMSGILIQKD ANYKLMSAED LRDFSDLTTT VLTQKQVIPF FSSMELANFH LKQMFGYVKQ 120
121 SKTKAGQPQY TVMDAITLTL IQEHKLALEW VGNIMNDTIA DSVITILLGI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [614-775] |
1 11 21 31 41 51
| | | | | |
1 ESSPASVKLT SHKCNHLHSH LDKPPKVSKE EDRIKKLMMF LDNQFGESMT KTEKGVEIKF 60
61 EKYEASIDFS TMKVECSNEA LRSRVVHVLS RAINTILPFS EASQNDVSED DFENEESDDD 120
121 KIFEQQTKIE DDVKNENKTE PVEEQKSEEK NEQPNLKKEE LS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
