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Protein Overview: SPAC8C9.06c

General Information:
Name(s) found: SPAC8C9.06c [Sanger Pombe]
Description(s) found:
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  • pir||T39143 hypothetical protein SPAC8C9.06c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74644165|sp|O14275.1|YET6_SCHPO RecName: Full=Pentatricopeptide repeat-containing protein C8C9.06c [NCBI NR]
  • gi|2408089|emb|CAB16294.1| mitochondrial translation regulator (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115189|ref|NP_594277.1| mitochondrial translation regulator (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial translation regulator [Sanger Pombe]
  • Pentatricopeptide repeat-containing protein C8C9.06c OS=Schizosaccharomyces pombe GN=SPAC8C9.06c PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; CONTAINS MULTIPLE PPR DOMAINS; PREDICTED N-TERMINAL SIGNAL SEQUENCE: O14275; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN; CONTAINS MULTIPLE PPR DOMAINS; CONTAINS PREDICTED N-TERM SIGNAL SEQUENCE: O14275; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • SPAC8C9.06c protein [4896.FASTAC]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2408089|emb|CAB16294.1| SPAC8C9.06c [Schizosaccharomyces pombe]gi|7491266|pir||T39143 hypothetical protein SPAC8C9.06c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||mitochondrial translation regulator |Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14275) Hypothetical protein [pompep4896_normal_reversed]
  • hypothetical protein SPAC8C9.06c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC8C9.06c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |ppr4||mitochondrial translation regulator Ppr4|Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 931 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    mitochondrial inner membrane [ISSLink to PubMed article]
    Biological Process: regulation of translation [ISSLink to PubMed article]
    RNA metabolic process [ISSLink to PubMed article]
    mitochondrial translation [RCALink to PubMed article]
    Molecular Function: translation regulator activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSFAYRHI WCFWRFNTPL LWFPQPLKYW PAFQQSHTFN SMSVFKNDNA IANQTTVNES  60
   61 DVKRNVEKIN DIYECSNNTK SPCFPNSDSR IPLVNWKTST NPTLQVRAYM LDLLLPFFTL 120
  121 DLLPFLNKVC ECCNHMLLDN PKIKQDLPFA FCYLFSSYFS YKSSRQYTCS SEEISKVFRH 180
  181 LNRLGGSEYV LHLFAQIPKA LCKELTDVRT LNHPLRSIFT FCFKNISNPP NLLKLLTKLY 240
  241 PRSDRANEVL YTQYLGFLTK RGDYQIAIYM FDEMYRTHHW SSFTACRLMI ESLVRQNKFE 300
  301 EAISLYKKII AKRPKIARDK KILNLLLYIS TVSNRSPDAF KLALQSISNA NQIPSFDVFS 360
  361 RLMSALVKYN MTEMILPLVK QYDHKFRNLY SPNIFLSIVQ ALVFCGDMVN IQRWYNMSRV 420
  421 NSELSRIKHL LNCFLNSSTV SLDVSMVLEL LRDLKKKKIK VDERTLVICI TIFSRRKDLF 480
  481 AMEKIHQYFS DQGIKTSNQA YAALLDAYIE AEDTEKIELY LGKIRRLGIT EDVSINRMLM 540
  541 RLALDRLDWD LLEQCTKVAE RKDPEGQDYL STITMLYHVR QHELNLALRI FSGIQKPNVV 600
  601 HYSIAATVLG NLNQLDQLLL LEKRMESEGK APTALSLVAF VSSYCKQGAE GLDEAKRYMS 660
  661 KNFQPDKRAL LFNPRTANDM TYPPSLFSSL IKEYTSLGDI KEAKQVLSTY LEYFSKNITS 720
  721 KPDIPFAIAS MRLYCSLHDT VLSRQFWDLI LQVAQQNFIT TDIAAVVDDK NIPSPSGVIP 780
  781 AYKSALNVAA ETYFSFLASV NSFQELDQEW SRLEKLGFEY DDSLQNKRII WLLYDDRLDA 840
  841 AIKRVYNIFL SSKRIEELIP DASSQNSIIS FFLSPDSPLY FSTLKALRDK LDMAVEDDFV 900
  901 RISQGILVPT VKYLQTIRRD NEILFNLLAK V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..184] PSI-BLAST 5.045757 No description for 2c0mA was found.
    2 View Details [185..601] PSI-BLAST 27.522879 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
    3 View Details [602..819] MSA 1.726983 View MSA. No confident structure predictions are available.
    4 View Details [820..931] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  2.29041171814244 bayes_pls_golite062009
  • protein binding
    		•  1.6279032205159 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.36301889945421 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.04482640570705 bayes_pls_golite062009
  • DNA binding
    		•  1.03582297487751 bayes_pls_golite062009
  • transcription factor activity
    		•  0.39224150319016 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.63

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle