| Protein: | SPAC8C9.06c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 931 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC8C9.06c.
| Description | E-value | Query Range |
Subject Range |
|
|
591.0 | [0..18] | [929..66] |
|
|
566.0 | [0..9] | [822..105] |
|
|
540.0 | [0..42] | [902..187] |
|
Region A: Residues: [1-184] |
1 11 21 31 41 51
| | | | | |
1 MSKSFAYRHI WCFWRFNTPL LWFPQPLKYW PAFQQSHTFN SMSVFKNDNA IANQTTVNES 60
61 DVKRNVEKIN DIYECSNNTK SPCFPNSDSR IPLVNWKTST NPTLQVRAYM LDLLLPFFTL 120
121 DLLPFLNKVC ECCNHMLLDN PKIKQDLPFA FCYLFSSYFS YKSSRQYTCS SEEISKVFRH 180
181 LNRL
|
| Detection Method: |  |
| Confidence: | 5.045757 |
| Match: | 2c0mA |
| Description: | No description for 2c0mA was found. |
|
Region A: Residues: [185-601] |
1 11 21 31 41 51
| | | | | |
1 GGSEYVLHLF AQIPKALCKE LTDVRTLNHP LRSIFTFCFK NISNPPNLLK LLTKLYPRSD 60
61 RANEVLYTQY LGFLTKRGDY QIAIYMFDEM YRTHHWSSFT ACRLMIESLV RQNKFEEAIS 120
121 LYKKIIAKRP KIARDKKILN LLLYISTVSN RSPDAFKLAL QSISNANQIP SFDVFSRLMS 180
181 ALVKYNMTEM ILPLVKQYDH KFRNLYSPNI FLSIVQALVF CGDMVNIQRW YNMSRVNSEL 240
241 SRIKHLLNCF LNSSTVSLDV SMVLELLRDL KKKKIKVDER TLVICITIFS RRKDLFAMEK 300
301 IHQYFSDQGI KTSNQAYAAL LDAYIEAEDT EKIELYLGKI RRLGITEDVS INRMLMRLAL 360
361 DRLDWDLLEQ CTKVAERKDP EGQDYLSTIT MLYHVRQHEL NLALRIFSGI QKPNVVH
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.29041171814244 | bayes_pls_golite062009 |
| protein binding | 1.6279032205159 | bayes_pls_golite062009 |
| transcription regulator activity | 1.36301889945421 | bayes_pls_golite062009 |
| nucleic acid binding | 1.04482640570705 | bayes_pls_golite062009 |
| DNA binding | 1.03582297487751 | bayes_pls_golite062009 |
| transcription factor activity | 0.39224150319016 | bayes_pls_golite062009 |
|
Region A: Residues: [602-819] |
1 11 21 31 41 51
| | | | | |
1 YSIAATVLGN LNQLDQLLLL EKRMESEGKA PTALSLVAFV SSYCKQGAEG LDEAKRYMSK 60
61 NFQPDKRALL FNPRTANDMT YPPSLFSSLI KEYTSLGDIK EAKQVLSTYL EYFSKNITSK 120
121 PDIPFAIASM RLYCSLHDTV LSRQFWDLIL QVAQQNFITT DIAAVVDDKN IPSPSGVIPA 180
181 YKSALNVAAE TYFSFLASVN SFQELDQEWS RLEKLGFE
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [820-931] |
1 11 21 31 41 51
| | | | | |
1 YDDSLQNKRI IWLLYDDRLD AAIKRVYNIF LSSKRIEELI PDASSQNSII SFFLSPDSPL 60
61 YFSTLKALRD KLDMAVEDDF VRISQGILVP TVKYLQTIRR DNEILFNLLA KV
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
