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Protein Overview: SPBC1271.10c

General Information:
Name(s) found: SPBC1271.10c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • membrane transporter [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 581 amino acids

    Gene Ontology:
    Cellular Component: cell cortex [IDALink to PubMed article]
    integral to membrane [IEA]
    Biological Process: transmembrane transport [IEA]
    transport [ISSLink to PubMed article]
    Molecular Function: transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDGYVEEL PGTILIYKEN QYAASEHSVL KKDGDIVLQP QPSDDPNDPL NWNKFRKNWH  60
   61 LVLICLVSLV TGAIANDAGS AQDQMNAELG ISYDAMDNAA GVLFICVGYF TYLAMPATFL 120
  121 YGRRCVYLVC LLFGMLGSMW FALVKTTSNS IGNQAFIGIS EACAEALTQF SVSEVFFEHE 180
  181 RGIKIGIYIL STSVGTYLGP LAAGYIASSQ GWRWIGWWGL IISGITFVLF LFTFEETTFD 240
  241 RAAAIDRKQI QISNDQLTVK EDFDLKDMQS DIKPDVEKSD AMDDSKMKVD YTVNEISNAV 300
  301 QPIYSKPSYW KRIALITPAN SLSGIGFRQY IMRLFQTLRI FLFPAVLYSG LQWGAQDAWL 360
  361 SFYLTTEEED WMEAPYNYGD NAVAIMNVPC IIGATIGCIY GGYFGDYFTL WAAKRNNGIK 420
  421 EAESRLWLMI LPCIINPIGL FMFGIGTARH WHWGPTYVGL GFIGFGWGCA GDISMAYLMD 480
  481 AYPGMVLEAM VGVSVINNTF GYVFTFACQS WIDSLGTERT YISIGVLCFI FIATSFPMIL 540
  541 CGKRLRKWTA KQYYTFLNVR NRLDEKIPDQ DRRGQDGVES R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..516] PSI-BLAST 16.0 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
    2 View Details [517..581] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • substrate-specific transmembrane transporter activity
    		•  5.21742729128468 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.31748220369305 bayes_pls_golite062009
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  4.0441553876112 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.3426261924492 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  1.03584454754608 bayes_pls_golite062009
  • binding
    		•  1.01584233411372 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle