YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1271.10c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.99
Transmembrane Helix	59	79	0.91
Non-Cytoplasmic	80	98	0.83
Transmembrane Helix	99	115	0.94
Cytoplasmic	116	124	0.70
Transmembrane Helix	125	144	0.95
Non-Cytoplasmic	145	154	0.75
Transmembrane Helix	155	173	0.86
Cytoplasmic	174	184	0.75
Transmembrane Helix	185	207	0.89
Non-Cytoplasmic	208	213	0.88
Transmembrane Helix	214	234	0.95
Cytoplasmic	235	334	0.96
Transmembrane Helix	335	355	0.89
Non-Cytoplasmic	356	381	0.96
Transmembrane Helix	382	405	0.89
Cytoplasmic	406	425	0.89
Transmembrane Helix	426	446	0.96
Non-Cytoplasmic	447	455	0.72
Transmembrane Helix	456	478	0.85
Cytoplasmic	479	485	0.76
Transmembrane Helix	486	508	0.83
Non-Cytoplasmic	509	519	0.84
Transmembrane Helix	520	541	0.94
Cytoplasmic	542	581	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPDGYVEEL PGTILIYKEN QYAASEHSVL KKDGDIVLQP QPSDDPNDPL NWNKFRKNWH  60
   61 LVLICLVSLV TGAIANDAGS AQDQMNAELG ISYDAMDNAA GVLFICVGYF TYLAMPATFL 120
  121 YGRRCVYLVC LLFGMLGSMW FALVKTTSNS IGNQAFIGIS EACAEALTQF SVSEVFFEHE 180
  181 RGIKIGIYIL STSVGTYLGP LAAGYIASSQ GWRWIGWWGL IISGITFVLF LFTFEETTFD 240
  241 RAAAIDRKQI QISNDQLTVK EDFDLKDMQS DIKPDVEKSD AMDDSKMKVD YTVNEISNAV 300
  301 QPIYSKPSYW KRIALITPAN SLSGIGFRQY IMRLFQTLRI FLFPAVLYSG LQWGAQDAWL 360
  361 SFYLTTEEED WMEAPYNYGD NAVAIMNVPC IIGATIGCIY GGYFGDYFTL WAAKRNNGIK 420
  421 EAESRLWLMI LPCIINPIGL FMFGIGTARH WHWGPTYVGL GFIGFGWGCA GDISMAYLMD 480
  481 AYPGMVLEAM VGVSVINNTF GYVFTFACQS WIDSLGTERT YISIGVLCFI FIATSFPMIL 540
  541 CGKRLRKWTA KQYYTFLNVR NRLDEKIPDQ DRRGQDGVES R