YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC1683.12

General Information:
Name(s) found: SPBC1683.12 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
SHOW ALL
  • nicotinic acid plasma membrane transporter [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 482 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: transmembrane transport [IEA]
    nicotinamide mononucleotide transport [ISSLink to PubMed article]
    Molecular Function: nicotinamide mononucleotide transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTMEEEKVI SKSTSVDISE GTFDDITIEK KEEAKLVRKL DWYLMPMFSV LYFLSFLDRA  60
   61 NIGNAAVVGL KEDLKLQAYQ YSAAVSVFYA TYITAETPSV LLVKKFGPHY YLSAMIIGWS 120
  121 LVTIFTCFVR HYWSLVLTRL LLGICEGGFF PCLSLYISMT YKREEQGKRL AYLYVCSCFS 180
  181 GAFGGLIATG LTKIPKSSGL PNWGWLYIIE GLISAISALW ILFCLPDDPS TARFLNPREK 240
  241 ELMKIRAEQR QKYMGSPNFD WTQFRKAFKD PKMYMSCVIQ FCQDLVLYGI STFLPSILKL 300
  301 ELGYSSLAAQ YMSVPVYALG GISVYVICLL SDRTNIRGWF IIGMNFFGLA GFIILLATTN 360
  361 SAANYVATYL IALPLYPTVA LNITWINNNM APHYRRATAL GCNQTIGNLA GVIAGQVYRS 420
  421 SPYKLGHGFA LGCTVVGTLT ATAMRFYLQR QNKIKQEILN GERVDEKKER DGCDALDFVY 480
  481 VL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..482] PSI-BLAST 32.154902 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • substrate-specific transmembrane transporter activity
    		•  5.46247398538901 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.58978526526921 bayes_pls_golite062009
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  3.94605227012838 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  3.88180006470231 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  2.52916479889426 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • binding
    		•  0.873217664940684 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • phosphate transmembrane transporter activity
    		•  0.312628600969375 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle