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Protein Overview: SPBC1271.09

General Information:
Name(s) found: SPBC1271.09 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • glycerophosphodiester transporter [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 543 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    plasma membrane [ISSLink to PubMed article]
    Biological Process: transmembrane transport [IEA]
    glycerophosphodiester transport [ISSLink to PubMed article]
    Molecular Function: glycerophosphodiester transmembrane transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGWDESKY VDNGEDEVVR QVSEPSVEEP IEASVTRYRS DEEKLDDKSS GAHVTEKEAE  60
   61 FDIEGGSRET SQWKHFLNVA VAGVALMSDG YCSNSIGTVI TILRKLYPEE TTHNKSLQDI 120
  121 GMIAYVGTIV GQLSFGWYSD RFGRKNGMIT ATIILIVSTA LCTGAYGYKG SINGMLSALI 180
  181 AYRFFLGIGI GAEYPCGSVA ASESSNELKS GLRHAAFIVV TDGAIDFGFV VGALVPYILV 240
  241 CIFGEHHLRI VWRLSIGLGL VIPCVLLPFR IAMKDPKTYV KHKVPLTKIP WLLVLKMYGF 300
  301 RLFILCLIWF VYDLSAFAFG LYSSTIVDGV LPADASTARS FGWNVLINTF YLPGALLGGV 360
  361 FSDLLGPKYC LITGLVLQSI FGFFMSGFYN QLVHKIAGFC VIYGIFLTLG EFGPGGNIGL 420
  421 LASKTSPTAI RGVYYGIAAA IGKCGAIAGV YAFGGDQVRN YFYAASAMAI FVAVLALLFV 480
  481 PKLKQTCIED EDKRFIQACI DAGYGNPYNY EKNEPEQLEE PDRPPAFNPF LSATFSFHHI 540
  541 ILC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..543] PSI-BLAST 29.69897 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • substrate-specific transmembrane transporter activity
    		•  5.21742729128468 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  4.31748220369305 bayes_pls_golite062009
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  3.74166040263114 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  3.60627834007397 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.3426261924492 bayes_pls_golite062009
  • organic anion transmembrane transporter activity
    		•  2.98462343619844 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  2.17838823008408 bayes_pls_golite062009
  • phosphate transmembrane transporter activity
    		•  1.78662033436109 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • binding
    		•  0.805286077372817 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle