YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC1271.09
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	75	0.83
Transmembrane Helix	76	97	0.57
Non-Cytoplasmic	98	119	0.68
Transmembrane Helix	120	138	0.77
Cytoplasmic	139	146	0.86
Transmembrane Helix	147	168	0.92
Non-Cytoplasmic	169	178	0.78
Transmembrane Helix	179	201	0.84
Cytoplasmic	202	216	0.86
Transmembrane Helix	217	240	0.88
Non-Cytoplasmic	241	249	0.83
Transmembrane Helix	250	272	0.91
Cytoplasmic	273	296	0.87
Transmembrane Helix	297	319	0.80
Non-Cytoplasmic	320	340	0.87
Transmembrane Helix	341	361	0.89
Cytoplasmic	362	368	0.75
Transmembrane Helix	369	389	0.90
Non-Cytoplasmic	390	398	0.66
Transmembrane Helix	399	421	0.87
Cytoplasmic	422	431	0.89
Transmembrane Helix	432	453	0.95
Non-Cytoplasmic	454	460	0.84
Transmembrane Helix	461	480	0.96
Cytoplasmic	481	543	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGWDESKY VDNGEDEVVR QVSEPSVEEP IEASVTRYRS DEEKLDDKSS GAHVTEKEAE  60
   61 FDIEGGSRET SQWKHFLNVA VAGVALMSDG YCSNSIGTVI TILRKLYPEE TTHNKSLQDI 120
  121 GMIAYVGTIV GQLSFGWYSD RFGRKNGMIT ATIILIVSTA LCTGAYGYKG SINGMLSALI 180
  181 AYRFFLGIGI GAEYPCGSVA ASESSNELKS GLRHAAFIVV TDGAIDFGFV VGALVPYILV 240
  241 CIFGEHHLRI VWRLSIGLGL VIPCVLLPFR IAMKDPKTYV KHKVPLTKIP WLLVLKMYGF 300
  301 RLFILCLIWF VYDLSAFAFG LYSSTIVDGV LPADASTARS FGWNVLINTF YLPGALLGGV 360
  361 FSDLLGPKYC LITGLVLQSI FGFFMSGFYN QLVHKIAGFC VIYGIFLTLG EFGPGGNIGL 420
  421 LASKTSPTAI RGVYYGIAAA IGKCGAIAGV YAFGGDQVRN YFYAASAMAI FVAVLALLFV 480
  481 PKLKQTCIED EDKRFIQACI DAGYGNPYNY EKNEPEQLEE PDRPPAFNPF LSATFSFHHI 540
  541 ILC