YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPAC2C4.17c

General Information:
Name(s) found: SPAC2C4.17c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • MS ion channel protein 2 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 840 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [ISSLink to PubMed article]
    Biological Process: ion transport [ISSLink to PubMed article]
    transmembrane transport [IEA]
    cellular response to stress [IEPLink to PubMed article]
    Molecular Function: mechanically-gated ion channel activity [ISSLink to PubMed article]
    calcium ion binding [NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEHRREPHR RSGYQDDSAF TNTEKLVDEL DHNVEPEQLL EKNRTDFKLM YVIVKFYRWF  60
   61 NNLSFITRWI TIWFPLAGAL VIPLAVGVSP YPNAKLGGVR IFWIFVWLEV AWGGFWVSRV 120
  121 IARLLPYILY PLMGILPFTM YKYTVILTAL EMPLAIFFCS IVCVCTFSPI MIGKGNFTST 180
  181 TVTTTTSATA TPTASASSNA VESVFVTKTA ASVPSWIKVI TKILGAAVVT SIVLLLEKIF 240
  241 LHFIGFHYHE VQYQYRITDN KRNTAVLAKL LTAALDAPYH DSPRVRRQDY LLGLIDTRSM 300
  301 SESKGSGNGK LRKVKKISKN AKRIFSKTRN AISTAFTDML GKHAKDLTPE QEFILETIRS 360
  361 KKKCLALARK IWYSLVPEGE DCFQKEDLIG LIPDDEINDI FHILDNDYSR TVTLDEMEQF 420
  421 TREISIEFRS ISSSLRDVDL ALGKLDRVGL GVVGIIAVLT FISFLDTSFA TILAAFGTTL 480
  481 LSLSFVFSTS AQELMSSIIF LFSKHPFDIS DVVIVNNIKY EVVSLSLLFT VFRTMGGSTV 540
  541 QAPNSLLNTL FIENLRRSQP QSETITIVSP FATDFKQLER LRDLLLTFVK ENERDFRPII 600
  601 DLNVSDFSTL DSLKFTVTYY YKSNWQNVSL QCVRRNKFMC ALKNAIATTN LPAVADPVRG 660
  661 SPDYPFVIEQ YNLERPEYSK TASRPQFSDI SSTASSNSLS NKPGFAHSES RNYHTHDEDN 720
  721 SSDDNHKRED RGHLPAQYLR QSVATWQIPN LISAIEAYDS QNESSQENAT YTVVESNGNA 780
  781 NGDNTATNSQ GATDNGQTTT NTTQNNVDNT QATTDNTQAN TDNMQVAIDY SQNMDGQIQY 840
  841

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..247] MSA 1.208985 View MSA. No confident structure predictions are available.
    2 View Details [248..311] deduced N/A No confident structure predictions are available.
    3 View Details [312..668] PSI-BLAST 49.69897 No description for 2oauA was found.
    4 View Details [669..763] MSA 1.534993 View MSA. No confident structure predictions are available.
    5 View Details [764..840] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • ion transmembrane transporter activity
    		•  2.953242113316 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.6977929623745 bayes_pls_golite062009
  • gated channel activity
    		•  2.26339914904933 bayes_pls_golite062009
  • ion channel activity
    		•  2.23696248116611 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.14666448103271 bayes_pls_golite062009
  • channel activity
    		•  2.13686688345078 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.13686688345078 bayes_pls_golite062009
  • binding
    		•  1.54954691710605 bayes_pls_golite062009
  • transporter activity
    		•  1.35148640692368 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.16179647485809 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.968340657063558 bayes_pls_golite062009
  • protein binding
    		•  0.0993281469820123 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle