YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPBC8D2.16c

General Information:
Name(s) found: SPBC8D2.16c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
SHOW ALL
  • DUF171 family protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 315 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    nucleolus [ISSLink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKESEIQSL PPTRRYTISL ALPISSLNVA YNLQLKTSFV WKISRIVSLY GIDEIILLED  60
   61 PEYVQNTQVH TLSSDAYLKD PTKFLTDLLC YFETPFFMRK ELFPLNPHLK YTSCFPLLPL 120
  121 RNDKASTVNI EFPYREGIVT HPSPQAKNKY IINAGLSHNV IVSSPSVLAP RTRVTVRLKA 180
  181 QSPNEEGQLQ GDIVSFSAPR EKGGHYWGYK VRSCLSSQLC KSSPYKGGYD FVVQINSQTS 240
  241 AITSKELEAS LPSSFRHAVL VLQDNVVQKE LVDSTAKSIS FNPFPVSFLN DPIPEEILLA 300
  301 AMTRLSDMLL MHGRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..315] PSI-BLAST 68.69897 Hypothetical protein MTH1 (MT0001), insert domain; Hypothetical protein MTH1 (MT0001), dimerisation domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  0.720818241344343 bayes_pls_golite062009
  • transferase activity
    		•  0.688889531234865 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.380921013543347 bayes_pls_golite062009
  • structural molecule activity
    		•  0.299226061385558 bayes_pls_golite062009
  • binding
    		•  0.293817467887223 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.246383536367751 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.24178739108272 bayes_pls_golite062009
  • catalytic activity
    		•  0.030872290848594 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.80

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle