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Protein Overview: gde1

General Information:
Name(s) found: gde1 / SPAPB1E7.05 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • glycerophosphoryl diester phosphodiesterase Gde1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1076 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article][ISS]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    Biological Process: glycerol metabolic process [IEA]
    glycerophospholipid catabolic process [ISS]
    Molecular Function: glycerophosphocholine phosphodiesterase activity [ISS]
    phospholipase C activity [IEA]
    glycerophosphodiester phosphodiesterase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLENDLQKVV NLFNTRIVQL DNYVTRLSTE KSPNTEITQA LSSSYEAEEK AKQLKELDFR  60
   61 LQQLSSFCEW NKLAFEKLAA NMDKHLGTER LVTFYEQKVC KLDFANSSKI YESMIALKAL 120
  121 NSSQNDSEVK DKLEKLSIHH PLKKDLLAFI QLDIAAEVVT ACINAPDSVL VDILAASIIA 180
  181 GAKACMREVI GRIGLRSECL ASALRRAINN LCGPDEGVLY FLEVLKQICS VVYVDSYHSN 240
  241 RLLSRILLVE RNSKGQSVMH SVAKLGWAGL CSKFCEIVSS IPDSEPLNWM LPCWRDVMHD 300
  301 TPLTLAIKGN HVEALHALLS AQDKETTSTK PGPVPPLVLT CCVGDYDLIV EELILAGFNP 360
  361 NEVDASSNTA LHTAVRYNRP ECVKMLLKLG ANPSARDFLN SWTPLMLASA TGLSEIVSIL 420
  421 VASGASVDEV DSSGWTAMEQ AVVRGYLHLA DKLRTQVALS DKPVNLHTLY IKASSSEMRS 480
  481 RKRAMDLQLS RSVVIIRISD LAGRIRVSLQ GDDAVYVSGR SPSFAASRPS SVDFMSQSTD 540
  541 SLSKNDTTAS NGSMTPSSSQ NNSVIIDIPR SHFDNAGEVC LENLAEPDEI ADDSIHLHYD 600
  601 AAQENSPQPV NGSSPPYELV FVTRNTEEAT ITIDLLANRS HKILGRTVCC LTSLVSDLGN 660
  661 HMQSLKPLAP LPLLSSKTLK PIAHVNADVL ISKVTVDDRF SSNDGISTPA LSLEAVSNVS 720
  721 RTALEDAERS LHKSATTTSE SGKSNGVAVI GHRGLGKNQP DRLSLQLGEN TLQSFIKAAD 780
  781 LGASYVELDV QMTKDMVPVV YHDFIVNETG TDAQVHSLTL EQFLGASHSP SEEIKDDASD 840
  841 IQQKRRPRAY SSSFTPSGSQ VNFGEFAEEN ARLKPKVYKG NALGHTICAP FTTLKDVLKE 900
  901 VPQSVGLNVE FKYPMLSEAE EEKLLPIAYD YNFYVDTILS IIKKYGGKRK YIFSSFNPDI 960
  961 CILLSLKSTN PVLFLTEGGT AYRTDVRAAS LRQALKFASQ WSFLGIVSAC EPLIMCPRLI1020
 1021 KAVKQLGLSC YTYGVLNNDV DNVRRQVRFG VDAVIVDNVL AIRRALNQYD ESLESD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] deduced N/A No confident structure predictions are available.
    2 View Details [137..255] PSI-BLAST 38.0 No description for 2f8xK was found.
    3 View Details [256..658] PSI-BLAST 84.69897 Ankyrin-R
    4 View Details [659..727] deduced N/A No confident structure predictions are available.
    5 View Details [728..1076] PSI-BLAST 52.39794 Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.819335581329918 bayes_pls_golite062009
  • protein binding
    		•  0.710332507917693 bayes_pls_golite062009
  • calcium-independent phospholipase A2 activity
    		•  0.621306773219824 bayes_pls_golite062009
    4 No functions predicted.
    5
    Term Confidence Notes
  • glycerophosphodiester phosphodiesterase activity
    		•  4.27697417361287 bayes_pls_golite062009
  • phosphoric diester hydrolase activity
    		•  3.6633363681844 bayes_pls_golite062009
  • phospholipase activity
    		•  3.3535603060637 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  3.27299307330343 bayes_pls_golite062009
  • phospholipase C activity
    		•  2.81479108775786 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphodiesterase activity
    		•  2.13368269358874 bayes_pls_golite062009
  • phosphoinositide phospholipase C activity
    		•  2.13368269358874 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.48964499825589 bayes_pls_golite062009
  • hydrolase activity
    		•  1.41001330359992 bayes_pls_golite062009
  • lipase activity
    		•  1.30779031242608 bayes_pls_golite062009
  • phosphatidylglycerol phospholipase C activity
    		•  1.28645679518658 bayes_pls_golite062009
  • catalytic activity
    		•  1.22328099675039 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle