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Protein Overview: SPAC4D7.10c

General Information:
Name(s) found: SPAC4D7.10c [Sanger Pombe]
Description(s) found:
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  • gi|7491132|pir||T38801 hypothetical protein SPAC4D7.10c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3183385|sp|O14174.1|YE5A_SCHPO RecName: Full=Uncharacterized protein C4D7.10c [NCBI NR]
  • gi|2330813|emb|CAB11282.1| SAGA complex subunit Spt20 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115875|ref|NP_594963.1| SAGA complex subunit Spt20 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • SAGA complex subunit Spt20 [Sanger Pombe]
  • Uncharacterized protein C4D7.10c OS=Schizosaccharomyces pombe GN=SPAC4D7.10c PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; SEQUENCE ORPHAN: O14174; [pompepVF.fasta]
  • Hypothetical protein C4D7.10c in chromosome I [pompep4896]
  • |||hypothetical protein [pompepnew.fasta]
  • |||hypothetical protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|2330813|emb|CAB11282.1| SPAC4D7.10c [Schizosaccharomyces pombe]gi|3183385|sp|O14174|YE5A_SCHPO Hypothetical protein C4D7.10c in chromosome Igi|7491132|pir||T38801 hypothetical protein SPAC4D7.10c - fis [nrdb_11152004_Chlamydomonas]
  • |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O14174) Hypothetical protein C4D7.10c in chromosome I [pompep4896_normal_reversed]
  • |spt20||SAGA complex subunit Spt20 |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPAC4D7.10c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC4D7.10c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |spt20||SAGA complex subunit Spt20|Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 473 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    SAGA complex [ISSLink to PubMed article]
    Biological Process: chromatin remodeling [IC]
    transcription from RNA polymerase II promoter [IC]
    histone acetylation [ISSLink to PubMed article]
    regulation of transcription [ICLink to PubMed article]
    Molecular Function: transcription cofactor activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERNNGLGDY TYRYHGKELS LDDFQNKQGI ESSDDAFLSK IYENVSNFNV PRKLHDIEHK  60
   61 FSKEEPSLIL HIHKFHFRFE QQDGAFTYNG PVKSILQYIR MELIPPDCLE VFRNSDVKFY 120
  121 DGCLTVRIID HRQSPSADQT VQPQPGSTNQ QQQNNTNPIN NQPEDTKPNT NSPPVYHTVL 180
  181 RPTPETLWQD LCLLSESFAN SLSDEAVLTL ESNILLASEA PLFLTPAKSK AEMIQFMNQL 240
  241 ADSAPPCTRK KPQGSAQLAD EEAERLEKEN LLLLMDDQRK RDFQPTFQRL QFIENVRRKR 300
  301 AILQQRQMQM QQQQKAQQQQ SPKAQQPPAH LVQSAPVQRK TTPKIQRLPP SSIQIPPPKP 360
  361 MQKFPANAAS SESPPNATGN FLPSGPVPAN EPMLKRESVD LIKIRQLAIL FQQRASQLKA 420
  421 RGATREQITE ILNRQAIAAG TDLATVMTVA RNLHFQQLQM RQQQQQQQMK AER

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..238] MSA 3.032988 View MSA. No confident structure predictions are available.
    2 View Details [239..331] MSA 1.028992 View MSA. No confident structure predictions are available.
    3 View Details [332..473] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle