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Protein Overview: mrps18

General Information:
Name(s) found: mrps18 / SPAC1B3.18c [Sanger Pombe]
Description(s) found:
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  • pir||T38037 probable ribosomal protein, mitochondrial - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3183366|sp|O13882.1|YE1I_SCHPO RecName: Full=Uncharacterized protein C1B3.18c [NCBI NR]
  • gi|2330752|emb|CAB11244.1| mitochondrial ribosomal protein subunit S18 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115715|ref|NP_594803.1| mitochondrial ribosomal protein subunit S18 [Schizosaccharomyces pombe] [NCBI NR]
  • mitochondrial ribosomal protein subunit S18 [Sanger Pombe]
  • Uncharacterized protein C1B3.18c OS=Schizosaccharomyces pombe GN=SPAC1B3.18c PE=2 SV=1 [Swiss-Prot]
  • MITOCHONDRIAL RIBOSOMAL PROTEIN S11: O13882; [pompepVF.fasta]
  • Hypothetical protein C1B3.18c in chromosome I [pompep4896]
  • |||mitochondrial ribosomal protein S11 [pompepnew.fasta]
  • |||mitochondrial ribosomal protein S11|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • putative ribosomal protein small subunit component, mitochondrial [Schizosaccharomyces pombe]gi|2330752|emb|CAB11244.1| SPAC1B3.18c [Schizosaccharomyces pombe]gi|3183366|sp|O13882|YE1I_SCHPO Hypothetical protein C1B3.18c in chromosome Igi|7522532|pir|| [nrdb_11152004_Chlamydomonas]
  • |mrps18||mitochondrial ribosomal protein subunit s18|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (O13882) Hypothetical protein C1B3.18c in chromosome I [pompep4896_normal_reversed]
  • |mrps18||mitochondrial ribosomal protein subunit S18|Schizosaccharomyces pombe|chr 1|||Manual [pombe030305.revfasta]
  • SPAC1B3.18c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC1B3.18c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |mrps18||mitochondrial ribosomal protein subunit S18 |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 223 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    integral to membrane [IEA]
    mitochondrial small ribosomal subunit [ISSLink to PubMed article]
    Biological Process: mitochondrial translation [RCALink to PubMed article]
    translation [ISSLink to PubMed article]
    Molecular Function: structural constituent of ribosome [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKHSVTYN LSFFISFTFS SIFFSSLILF LVYKSVLSKL FFIKYLMLNL TKVGLRRFWS  60
   61 QSPRRNAPKK ELSSLLESTI TPKAFSKRTE EPNPIMQGTD TIPMPFYLHA KCLKNNTHIT 120
  121 LCSPERKIIF RASGGTCGFR KGKRRGYDAA YTICSKVLEQ IQVKRLGIEN LHVIFHGFSQ 180
  181 AREAVQNCLL GQEGAVIRDK IVKVMDRTPI KFGGPRGRRE RRI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..89] MSA 1.068993 View MSA. No confident structure predictions are available.
    2 View Details [90..223] PSI-BLAST 41.69897 No description for 1vs5K was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.83351366956976 bayes_pls_golite062009
  • structural molecule activity
    		•  9.25292687983044 bayes_pls_golite062009
  • RNA binding
    		•  1.52264031918826 bayes_pls_golite062009
  • binding
    		•  1.00308223323532 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.983215686081669 bayes_pls_golite062009
  • protein binding
    		•  0.452073733364249 bayes_pls_golite062009
  • rRNA binding
    		•  0.357032493028 bayes_pls_golite062009
  • catalytic activity
    		•  0.249767694451989 bayes_pls_golite062009
  • translation regulator activity
    		•  0.17520676474539 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle