YRC Public Data Repository - Protein Structure Prediction

Protein:	mrps18
Organism:	Schizosaccharomyces pombe
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mrps18.

Description	E-value	Query Range	Subject Range
gi\|85117800 - gi\|85117800\|ref\|XP_965330.1\| hypothetical protein NCU03230 [Neurospora crassa OR74A] gi\|32420445, gi\|... - gi\|32420445\|ref\|XP_330666.1\| hypothetical protein [Neurospora crassa], gi\|28927137\|gb\|EAA36094.1\| pr...	198.0	[0..21]	[223..163]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	178.0	[0..102]	[223..17]
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	178.0	[0..102]	[223..17]
gi\|222056681, gi... - gi\|222056681\|ref\|YP_002539043.1\| ribosomal protein S11 [Geobacter sp. FRC-32], gi\|221565970\|gb\|ACM21...	175.0	[0..102]	[223..17]
RS11_MARMM - 30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1	174.0	[0..90]	[223..3]
RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens GN=rpsK PE=3 SV=1 RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpsK ...	174.0	[0..102]	[223..17]
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1 RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1	172.0	[0..90]	[223..3]
RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus GN=rpsK PE=3 SV=1 RS11_CAUCN - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsK PE=3 SV=1 RS11_CAUCR - 30S ribosomal protein S11 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rpsK PE=3 SV=1	171.0	[0..90]	[223..3]
RS11_CAUSK - 30S ribosomal protein S11 OS=Caulobacter sp. (strain K31) GN=rpsK PE=3 SV=1	171.0	[0..90]	[223..3]
RS11_NITEU - 30S ribosomal protein S11 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsK PE=3 SV=... RS11_NITEU - 30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1	171.0	[0..94]	[223..7]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKHSVTYN LSFFISFTFS SIFFSSLILF LVYKSVLSKL FFIKYLMLNL TKVGLRRFWS  60
   61 QSPRRNAPKK ELSSLLESTI TPKAFSKRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [90-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEPNPIMQGT DTIPMPFYLH AKCLKNNTHI TLCSPERKII FRASGGTCGF RKGKRRGYDA  60
   61 AYTICSKVLE QIQVKRLGIE NLHVIFHGFS QAREAVQNCL LGQEGAVIRD KIVKVMDRTP 120
  121 IKFGGPRGRR ERRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1vs5K
Description:	No description for 1vs5K was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.83351366956976	bayes_pls_golite062009
structural molecule activity	9.25292687983044	bayes_pls_golite062009
RNA binding	1.52264031918826	bayes_pls_golite062009
binding	1.00308223323532	bayes_pls_golite062009
nucleic acid binding	0.983215686081669	bayes_pls_golite062009
protein binding	0.452073733364249	bayes_pls_golite062009
rRNA binding	0.357032493028	bayes_pls_golite062009
catalytic activity	0.249767694451989	bayes_pls_golite062009
translation regulator activity	0.17520676474539	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: