YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mrps18
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLKHSVTYN LSFFISFTFS SIFFSSLILF LVYKSVLSKL FFIKYLMLNL TKVGLRRFWS  60
   61 QSPRRNAPKK ELSSLLESTI TPKAFSKRTE EPNPIMQGTD TIPMPFYLHA KCLKNNTHIT 120
  121 LCSPERKIIF RASGGTCGFR KGKRRGYDAA YTICSKVLEQ IQVKRLGIEN LHVIFHGFSQ 180
  181 AREAVQNCLL GQEGAVIRDK IVKVMDRTPI KFGGPRGRRE RRI

Type	Start	End	Confidence
Cytoplasmic	1	10	0.63
Transmembrane Helix	11	33	0.90
Non-Cytoplasmic	34	40	0.63
Transmembrane Helix	41	55	0.34
Cytoplasmic	56	223	0.53