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Protein Overview: SPAC6B12.04c

General Information:
Name(s) found: SPAC6B12.04c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • aminotransferase class I and II [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    mitochondrion [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: 1-aminocyclopropane-1-carboxylate biosynthetic process [IC]
    Molecular Function: pyridoxal phosphate binding [IEA]
    1-aminocyclopropane-1-carboxylate synthase activity [IEA]
    transaminase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRGIRPSN KVAASRPDVW TLVNQATAEC KVPPVSLSQG FFNYNPPKFV LDAAKKSIDE  60
   61 VACNQYSHTR GRPSLRKALS EAYSPYFKRT LNPDTEIVVT AGANEGFFSV FAAFLNPGDE 120
  121 VIVMEPFFDQ YISNITMNGG VPVYVPIIPP EEGSVKPVSA GAWKLDMNKL RNAITEKTKM 180
  181 IVINTPHNPL GKIFSEEELN EIADLVLKHN LLVVSDEVYD RLSFVPFVRL ATLRPELFKH 240
  241 VVTVGSGGKT FGCTGWRVGW LIGDESLIKY SAAAHTRICF AVNSPCQEAL AIAFGEAEKH 300
  301 NYYEEYKSSY KKRFEILAKA FDQLEIPYTI PDGSYYTMAN FSKLKLPKDY PFPEEIANRP 360
  361 RDFKLCYWIL KEIGVATIPP TEFYTDEDAP VAENYLRFAF CKTFETLEEA ARRLQKLKDY 420
  421 F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..421] PSI-BLAST 81.69897 Crystal structure of human kynurenine aminotransferase I

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  5.51961002550688 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  1.63055151623667 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  1.63055151623667 bayes_pls_golite062009
  • transferase activity
    		•  1.44093490824786 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • 4-aminobutyrate transaminase activity
    		•  0.99097016439114 bayes_pls_golite062009
  • 5-aminolevulinate synthase activity
    		•  0.54326874956263 bayes_pls_golite062009
  • binding
    		•  0.536634592992536 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.319452731970428 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • aromatic-amino-acid:2-oxoglutarate aminotransferase activity
    		•  0.0916183433120769 bayes_pls_golite062009
  • cystathionine beta-lyase activity
    		•  0.0833010353195099 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.013097682076602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle