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Protein Overview: nop9

General Information:
Name(s) found: nop9 / SPAC6G9.02c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • RNA-binding protein Nop9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 655 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKRKTRGK KHSAKQKEEE VNSVVSPGIA KNDEGAGNDE GAYQVNRYTN EPVQPFFGAL  60
   61 DPEEEKYFQQ AEQAFANHFT RENEDTRFFV DSIYREVQGK ELIVCNNVFG SKVLEKLFPL 120
  121 STSRQIKSFF SALNGHYVEL IQTTFGSYAF EKLLSHMAAI LNLETQGVTE DQDDVLEGEN 180
  181 ENVFMTAETL LMYMYNEIRP EVSMLMSHKL AVHVLGKIFL LLDGYRFVYH DGNRTTMESI 240
  241 SVPESFPQFA YSIIDSATDN LDTPELRAYC VDKYASQIMR AFIRIDFERS KKTKKKHDPR 300
  301 LVSKLLLSNE YDLKELPFME TLLKDETGSR ILEVIVENMS ASHLLRFYAV FEGRFYRLCV 360
  361 HPIANFIMQR YIRRLGRKEI GSVIDELKKN TDNIIRKSFL PVLRTLLEKS NHLHCYQDDI 420
  421 FSMIQTSVTN SGKDANIIPC LLRSKHKRDK ANPENKERKL VNNLLGAQLL EEMLHCEKQH 480
  481 IQLLLDSVLD LSKEQILEYC LETVSSHLIE GILDLSDLNP VFLKKFLNIL SGSFATLAVS 540
  541 APGSHIVDKA WKATRALPLY RTRIVRELAE GGDDVKFDFY GKKVCSNWKV ELFRRAPDEW 600
  601 YRFMKQDEPS KRVHERARQY GRIVSGSSAN TQPLGEKRST ENDEELESGP KRVKV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] deduced N/A No confident structure predictions are available.
    2 View Details [81..289] FFAS03 3.01 Pumilio 1
    3 View Details [290..655] PSI-BLAST 82.39794 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  3.36069436734718 bayes_pls_golite062009
  • binding
    		•  2.36800795249393 bayes_pls_golite062009
  • protein transporter activity
    		•  2.15379995351782 bayes_pls_golite062009
  • protein binding
    		•  2.0097220759196 bayes_pls_golite062009
  • transporter activity
    		•  1.64183523191339 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.59410102249793 bayes_pls_golite062009
  • structural molecule activity
    		•  1.3916221897201 bayes_pls_golite062009
  • mRNA binding
    		•  1.35186555044783 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.31208344109907 bayes_pls_golite062009
  • signal sequence binding
    		•  1.17854394242826 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.08645493064764 bayes_pls_golite062009
  • DNA binding
    		•  0.956143892328242 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.856430517710521 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.494225771145501 bayes_pls_golite062009
  • transcription factor activity
    		•  0.371244009721798 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.258196347187333 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.18256596047763 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  0.0681894540457957 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.0149231171554869 bayes_pls_golite062009
    3
    Term Confidence Notes
  • RNA binding
    		•  3.51706019693543 bayes_pls_golite062009
  • protein transporter activity
    		•  2.53371837790268 bayes_pls_golite062009
  • binding
    		•  2.47395644967726 bayes_pls_golite062009
  • protein binding
    		•  2.13529412360404 bayes_pls_golite062009
  • transporter activity
    		•  1.75215962704174 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.64539435934931 bayes_pls_golite062009
  • mRNA binding
    		•  1.49239143012448 bayes_pls_golite062009
  • signal sequence binding
    		•  1.46991748555798 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.45007172288203 bayes_pls_golite062009
  • structural molecule activity
    		•  1.39201458088376 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  1.27627067567874 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.06250847754412 bayes_pls_golite062009
  • DNA binding
    		•  0.946847037737779 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.58863391569272 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.506596930838594 bayes_pls_golite062009
  • nuclear export signal receptor activity
    		•  0.501965300276747 bayes_pls_golite062009
  • transcription factor activity
    		•  0.362911773502049 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.229272703956702 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0330689772947346 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00566872062869428 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle