YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: SPAC1F3.05

General Information:
Name(s) found: SPAC1F3.05 [Sanger Pombe]
Description(s) found:
SHOW ONLY BEST
  • pir||T38076 conserved hypothetical protein SPAC1F3.05 - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19113920|ref|NP_593008.1| adaptin (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1723491|sp|Q10410.1|YD85_SCHPO RecName: Full=Probable ADP-ribosylation factor-binding protein C1F3.05 [NCBI NR]
  • gi|1256516|emb|CAA94623.1| adaptin (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • adaptin [Sanger Pombe]
  • Probable ADP-ribosylation factor-binding protein C1F3.05 OS=Schizosaccharomyces pombe GN=SPAC1F3.05 PE=2 SV=1 [Swiss-Prot]
  • POSSIBLY INVOLVED IN TRAFFICKING OF PROTEINS BETWEEN THE TRANS-GOLGI NETWORK AND THE VACUOLE; SIMILAR TO S. CEREVISIAE GGA2: Q10410; [pompepVF.fasta]
  • PROTEIN INVOLVED IN TRAFFICKING OF PROTEINS BETWEEN THE TRANS-GOLGI NETWORK AND THE VACUOLE; BY SIMILARITY TO YEAST GGA2: Q10410; [pompepV13]
  • Hypothetical protein C1F3.05 in chromosome I [pompep4896]
  • |||VHS domain [pompepnew.fasta]
  • |||VHS domain|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • conserved hypothetical protein [Schizosaccharomyces pombe]gi|1256516|emb|CAA94623.1| SPAC1F3.05 [Schizosaccharomyces pombe]gi|1723491|sp|Q10410|YD85_SCHPO Hypothetical protein C1F3.05 in chromosome Igi|7490277|pir||T38076 conserved hypothetical protein [nrdb_11152004_Chlamydomonas]
  • (Q10410) Hypothetical protein C1F3.05 in chromosome I [pompep4896_normal_reversed]
  • |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC1F3.05 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC1F3.05 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||Golgi localized Arf binding gamma-adaptin ortholog |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Probable ADP-ribosylation factor-binding protein C1F3.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1F3.05 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 510 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    trans-Golgi network [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: intracellular protein transport [ICLink to PubMed article]
    Golgi to vacuole transport [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSSQTLSKY IDKATDQFNL EPNLALNIEI ADLINEKKGN TPREAALLIL KRVNSANPTV  60
   61 SYLALHLLDI CVKNCGYPFH FQIASEEFLN GFVSRFPNHP ISRMNKIQSK MLEMLEEWNY 120
  121 MLCKNNRHRE DFSRIHDIRE LMAFRGYKFP AVDEDSIAVM KPNNSLRSAQ ELAREDLEAH 180
  181 KAKLQELLRR GTPMDLAEAN ALMKVIAGYD EENTEDYSAL AAADLESIRS KALRVKQFLV 240
  241 NQTVSLEEGT LADAVESLKV YQTKIARILR EENEDEYYVQ KLLSLNDLLI NVIEECSNSD 300
  301 LIHSGTNVVS SQPNVVESHV PPSSNDTKQE SSLIDLMKLT EEPAVPSPSL PTNVPANQSL 360
  361 SMLSSLSNSM SSTSNGALNS PSYSQAAIPN TNSSLTSILQ SDSLMISTQL TSVQKSSGFA 420
  421 SYSVQFSNCS LTWPVSEVVF QVAVVKSLKL QLLPHTGDAI IAPGKQNAAH EIMNITNIPA 480
  481 DASDLRIRWR VQWIIGTDHR VEQGESHLPL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] PSI-BLAST 38.0 Hrs
    2 View Details [161..370] PSI-BLAST 24.0 ADP-ribosylation factor binding protein Gga1
    3 View Details [371..510] PSI-BLAST 28.39794 Gamma1-adaptin domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • clathrin binding
    		•  4.42433208284373 bayes_pls_golite062009
  • ADP-ribosylation factor binding
    		•  3.85762908083934 bayes_pls_golite062009
  • binding
    		•  2.32938736470587 bayes_pls_golite062009
  • protein binding
    		•  2.16467447169895 bayes_pls_golite062009
  • small conjugating protein binding
    		•  1.40018260535396 bayes_pls_golite062009
  • ubiquitin binding
    		•  1.32638202696551 bayes_pls_golite062009
  • phosphoinositide binding
    		•  0.87586037360588 bayes_pls_golite062009
  • phospholipid binding
    		•  0.84481265656013 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.544430532077345 bayes_pls_golite062009
  • DNA binding
    		•  0.201426073572255 bayes_pls_golite062009
  • lipid binding
    		•  0.176990783274449 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.169924567699487 bayes_pls_golite062009
    2
    Term Confidence Notes
  • clathrin binding
    		•  5.9355718186759 bayes_pls_golite062009
  • binding
    		•  2.19865242653132 bayes_pls_golite062009
  • protein binding
    		•  1.957004610117 bayes_pls_golite062009
  • phosphoinositide binding
    		•  1.69886980741044 bayes_pls_golite062009
  • phospholipid binding
    		•  1.35873451348399 bayes_pls_golite062009
  • lipid binding
    		•  0.681936854618139 bayes_pls_golite062009
  • phosphatidylinositol-4,5-bisphosphate binding
    		•  0.2359206178887 bayes_pls_golite062009
  • phosphatidylinositol binding
    		•  0.10007172207713 bayes_pls_golite062009
    3
    Term Confidence Notes
  • binding
    		•  1.77203848422196 bayes_pls_golite062009
  • protein binding
    		•  1.57801165255065 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle