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Protein Overview: SPAC13G7.03

General Information:
Name(s) found: SPAC13G7.03 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • up-frameshift suppressor3 family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 278 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    nucleolus [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPDISKKRL PCKVLVFNLP PTLPEQVFLQ SINSFLPHVE WHRFSKGKAT VGTRSELLSF  60
   61 AYLKFQSATA VQEFFRVYQG HTFIDKKNNT YRAIVTIAPY QKIPPSKVKA DSLEGSLEQD 120
  121 PKFQEFKVQR ESYSQTASND DVIEKLQTST PLLQYLAEKK NAVVEKGKSK PSKKSVKAKK 180
  181 KLRLAEKPAS NNSKAGKSSQ ESKKSSKAPA ESAAAVIKED KVSDRKKSKK KPKKTPVSNS 240
  241 TASQASENAS DKKTKEKKSS GKQKIASKKK DQLTTDNV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..80] PSI-BLAST 29.522879 The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3
    2 View Details [81..278] PSI-BLAST 9.30103 Solution Structure of Choline Binding Protein A, Domain R2, the Major Adhesin of Streptococcus pneumoniae


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.92

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle