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Protein Overview: SPCC1672.07

General Information:
Name(s) found: SPCC1672.07 [Sanger Pombe]
Description(s) found:
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  • gi|7490150|pir||T41051 beta transducin - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|3451308|emb|CAA20445.1| U3 snoRNP-associated protein Utp21 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3219965|sp|O14053.1|YC47_SCHPO RecName: Full=Uncharacterized WD repeat-containing protein C1672.07 [NCBI NR]
  • gi|19075378|ref|NP_587878.1| U3 snoRNP-associated protein Utp21 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • U3 snoRNP-associated protein Utp21 [Sanger Pombe]
  • Uncharacterized WD repeat-containing protein C1672.07 OS=Schizosaccharomyces pombe GN=SPCC1672.07 PE=2 SV=1 [Swiss-Prot]
  • WD REPEAT PROTEIN: O14053; [pompepVF.fasta]
  • Hypothetical WD-repeat protein C1672.07 in chromosome III [pompep4896]
  • |||WD repeat protein [pompepnew.fasta]
  • |||WD repeat protein|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • beta transducin [Schizosaccharomyces pombe]gi|3451308|emb|CAA20445.1| SPCC1672.07 [Schizosaccharomyces pombe]gi|3219965|sp|O14053|YC47_SCHPO Hypothetical WD-repeat protein C1672.07 in chromosome IIIgi|7490150|pir||T41051 beta transducin - fission yeast [nrdb_11152004_Chlamydomonas]
  • (O14053) Hypothetical WD-repeat protein C1672.07 in chromosome III [pompep4896_normal_reversed]
  • |||U3 snoRNP-associated protein Utp21 |Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPCC1672.07 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Hypothetical WD repeat protein C1672.07 in chromosome III [nr-271106-contam.fasta]
  • hypothetical protein SPCC1672.07 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 902 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    small-subunit processome [IEA]
    cell division site [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed article]
    spindle [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    protein complex [RCALink to PubMed article]
    nucleolus [RCALink to PubMed article]
    small nucleolar ribonucleoprotein complex [ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFAEKKRRT YENAVKPLRK SRIYAPFRSI GHVSNAVPFD IEARGTHFLV TTSVGNTFQT  60
   61 YDCEKLNLLF VGKQLDKEIT CLKSFKDFML VAAGSKIFAY KRGKIIWDID VEQEHGTVTH 120
  121 LDAFGEWIIA CTSSRHVYVW KHASKYSVPE LHTTFLPNTN ADITSLLHPS TYLNKILLGF 180
  181 SDGALQIWNL RVSKRVHEFQ EFFGDGITSL TQAPVLDVLA VGTISGRIVI FNLKNGSILM 240
  241 EFKQDGQVLS CSFRTDGTPI LASSNPIGDL SFWDLSKRRI QNVTYNAHFG SLPKIQFLNG 300
  301 QPILVTAGPD NSLKEWIFDS MDGAPRILRS RNGHYEPPSF VKFYGKSVHF LISAATDRSL 360
  361 RAVSLYQDSQ STELSQGSVI SKAKKLNVRP EELKLPEITA LSSSNTREKY WDNVLTAHKN 420
  421 DSSARTWNWK SKTLGQHVLP TSDGTSVRSV CVSCCGNFGL IGSSKGVVDV YNMQSGIKRK 480
  481 SFGQSSLSGK PVTAVMLDNV NRILVTASLD GILKFWDFNK GNLIDSLDVG SSITHAIYQH 540
  541 SSDLVAVACD DFGIRIVDVQ TRKIVRELWG HSNRLTSFDF SDTGRWLVTA SLDGTIRTWD 600
  601 LPTGHLIDSI STPSVCTSLT FAPTGDYLAT THVDQVGISL WTNLSMFKHV STKALRLDDV 660
  661 VEVSAPSVSG EKGISVVEAA LNVESNAEDE EDISYRTMDQ LDPNLQTLSK LPRTQWQTLI 720
  721 NLEAIKARNA PKEVPKVPEK APFFLPSLKD QSEATVPKQP IATEISKPTA VASIKVSGTE 780
  781 FSTLLHGNDD DAFFEYLKSL GPAKIDLEIR SLDAYPPYEE FILFINIMTR RLSKRRDFEL 840
  841 VQACMSVFTK SHEDVLLMHD TPEDTVPVFE SLKAWESVHK EENQRLLDLV GYCSGILSFM 900
  901 RT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] PSI-BLAST 73.522879 PAF-AH Holoenzyme: Lis1/Alfa2
    2 View Details [95..331] FFAS03 6.42 No description for 2gnqA was found.
    3 View Details [332..406] PSI-BLAST 40.522879 Groucho/tle1, C-terminal domain
    4 View Details [407..740] PSI-BLAST 30.522879 Arp2/3 complex 41 kDa subunit ARPC1
    5 View Details [741..902] PSI-BLAST 33.0 Crystal Structure of Murine Coronin-1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • snoRNA binding
    		•  6.03079504484743 bayes_pls_golite062009
    		• 3.41022148055944 bayes_pls_golite062009
  • RNA binding
    		•  3.0829625416797 bayes_pls_golite062009
  • binding
    		•  2.22722319261713 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.5283366007575 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • structural molecule activity
    		•  1.20572493724069 bayes_pls_golite062009
  • protein binding
    		•  1.11897341394404 bayes_pls_golite062009
  • actin binding
    		•  0.794986868016276 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • ligase activity
    		•  0.20682813699621 bayes_pls_golite062009
  • tubulin binding
    		•  0.0577116761374565 bayes_pls_golite062009
  • mRNA binding
    		•  0.0519838181830878 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle