YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1672.07
Organism:	Schizosaccharomyces pombe
Length:	902 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.07.

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	739.0	[0..3]	[815..707]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	662.0	[0..13]	[643..1152]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	640.0	[0..114]	[778..865]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	632.0	[0..19]	[643..1030]
gi\|71670934, gi\|... - gi\|71676073\|ref\|ZP_00673816.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	614.0	[0..26]	[700..838]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	602.0	[0..15]	[607..592]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFAEKKRRT YENAVKPLRK SRIYAPFRSI GHVSNAVPFD IEARGTHFLV TTSVGNTFQT  60
   61 YDCEKLNLLF VGKQLDKEIT CLKSFKDFML VAAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.522879
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [95-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKIFAYKRGK IIWDIDVEQE HGTVTHLDAF GEWIIACTSS RHVYVWKHAS KYSVPELHTT  60
   61 FLPNTNADIT SLLHPSTYLN KILLGFSDGA LQIWNLRVSK RVHEFQEFFG DGITSLTQAP 120
  121 VLDVLAVGTI SGRIVIFNLK NGSILMEFKQ DGQVLSCSFR TDGTPILASS NPIGDLSFWD 180
  181 LSKRRIQNVT YNAHFGSLPK IQFLNGQPIL VTAGPDNSLK EWIFDSMDGA PRILRSR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.42
Match:	2gnqA
Description:	No description for 2gnqA was found.

Predicted Domain #3

Region A:
Residues: [332-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NGHYEPPSFV KFYGKSVHFL ISAATDRSLR AVSLYQDSQS TELSQGSVIS KAKKLNVRPE  60
   61 ELKLPEITAL SSSNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1gxrA
Description:	Groucho/tle1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [407-740]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 REKYWDNVLT AHKNDSSART WNWKSKTLGQ HVLPTSDGTS VRSVCVSCCG NFGLIGSSKG  60
   61 VVDVYNMQSG IKRKSFGQSS LSGKPVTAVM LDNVNRILVT ASLDGILKFW DFNKGNLIDS 120
  121 LDVGSSITHA IYQHSSDLVA VACDDFGIRI VDVQTRKIVR ELWGHSNRLT SFDFSDTGRW 180
  181 LVTASLDGTI RTWDLPTGHL IDSISTPSVC TSLTFAPTGD YLATTHVDQV GISLWTNLSM 240
  241 FKHVSTKALR LDDVVEVSAP SVSGEKGISV VEAALNVESN AEDEEDISYR TMDQLDPNLQ 300
  301 TLSKLPRTQW QTLINLEAIK ARNAPKEVPK VPEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1k8kC
Description:	Arp2/3 complex 41 kDa subunit ARPC1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
snoRNA binding	6.03079504484743	bayes_pls_golite062009
	3.41022148055944	bayes_pls_golite062009
RNA binding	3.0829625416797	bayes_pls_golite062009
binding	2.22722319261713	bayes_pls_golite062009
cytoskeletal protein binding	1.5283366007575	bayes_pls_golite062009
transcription regulator activity	1.25687092973217	bayes_pls_golite062009
nucleic acid binding	1.20712373307552	bayes_pls_golite062009
structural molecule activity	1.20572493724069	bayes_pls_golite062009
protein binding	1.11897341394404	bayes_pls_golite062009
actin binding	0.794986868016276	bayes_pls_golite062009
DNA binding	0.711274653406079	bayes_pls_golite062009
transcription factor activity	0.243992994917491	bayes_pls_golite062009
ligase activity	0.20682813699621	bayes_pls_golite062009
tubulin binding	0.0577116761374565	bayes_pls_golite062009
mRNA binding	0.0519838181830878	bayes_pls_golite062009

Predicted Domain #5

Region A:
Residues: [741-902]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APFFLPSLKD QSEATVPKQP IATEISKPTA VASIKVSGTE FSTLLHGNDD DAFFEYLKSL  60
   61 GPAKIDLEIR SLDAYPPYEE FILFINIMTR RLSKRRDFEL VQACMSVFTK SHEDVLLMHD 120
  121 TPEDTVPVFE SLKAWESVHK EENQRLLDLV GYCSGILSFM RT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	2aq5A
Description:	Crystal Structure of Murine Coronin-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: