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Protein Overview: usp109

General Information:
Name(s) found: usp109 / SPBC1289.12 [Sanger Pombe]
Description(s) found:
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  • pir||T39363 RNA binding protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|4490667|emb|CAB38692.1| U1 snRNP-associated protein Usp109 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|27734602|sp|O94621.1|YBKC_SCHPO RecName: Full=Uncharacterized RNA-binding protein C1289.12 [NCBI NR]
  • gi|19113628|ref|NP_596836.1| U1 snRNP-associated protein Usp109 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • U1 snRNP-associated protein Usp109 [Sanger Pombe]
  • Uncharacterized RNA-binding protein C1289.12 OS=Schizosaccharomyces pombe GN=SPBC1289.12 PE=2 SV=1 [Swiss-Prot]
  • RNA-BINDING PROTEIN: O94621; [pompepVF.fasta]
  • RNA BINDING PROTEIN: O94621; [pompepV13]
  • Hypothetical RNA-binding protein C1289.12 in chromosome II [pompep4896]
  • |||RNA-binding protein [pompepnew.fasta]
  • |||RNA-binding protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • RNA binding protein [Schizosaccharomyces pombe]gi|4490667|emb|CAB38692.1| SPBC1289.12 [Schizosaccharomyces pombe]gi|27734602|sp|O94621|YBKC_SCHPO Hypothetical RNA-binding protein C1289.12 in chromosome IIgi|7493328|pir||T39363 RNA binding protein - fis [nrdb_11152004_Chlamydomonas]
  • (O94621) Hypothetical RNA-binding protein C1289.12 in chromosome II [pompep4896_normal_reversed]
  • |usp109||U1 snRNP-associated protein Usp109|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC1289.12 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC1289.12 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 352 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [ICLink to PubMed article]
    Molecular Function: RNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEDYIRAIF ENVRKVNYYE DGESGAILKT CCIEFESQDA ARNALERQST QRLISGNPIS  60
   61 LDVVPEWQKP SYYMLFISNI DPEVSENDIK YLFQRYNFIS ARVLRCVDGT STSIAFIWLA 120
  121 NESDIQNAQV EMQGAFCLKR SILVHSVKSD KNTYLSSPGF YGTPQPLNQF TDPNNTAVYV 180
  181 HQLPENITTQ ELRSYFLHFG EILYTQVNNN SGRIVFAQRY FAEQAINEMN NFPLHGVRIQ 240
  241 LSWARPPSMA LLPSKQSTYW PALAAPVYPS MKDVPNNPFT PFSPINPYYA KSWNHTASAP 300
  301 LLPPGLKNGS DYPYLSVPPD ILNDSYLAMC EAVNSRLDAE STMLLPVHYS QA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..256] PSI-BLAST 20.69897 No description for 2ghpA was found.
    2 View Details [257..352] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  6.73097473547076 bayes_pls_golite062009
    		• 6.62953239642182 bayes_pls_golite062009
  • mRNA binding
    		•  5.29759606920196 bayes_pls_golite062009
  • U1 snRNA binding
    		•  4.22094068431436 bayes_pls_golite062009
  • snRNA binding
    		•  4.06596327298973 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.81920018903278 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  3.11990160533699 bayes_pls_golite062009
  • binding
    		•  3.05116833253954 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  2.93798024346416 bayes_pls_golite062009
  • structural molecule activity
    		•  1.29928829870122 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.07788694919471 bayes_pls_golite062009
  • DNA binding
    		•  0.978604858165557 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.591700155096213 bayes_pls_golite062009
  • protein binding
    		•  0.42571879933058 bayes_pls_golite062009
  • transcription factor activity
    		•  0.234742017105535 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle