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Protein Overview: SPAC4G8.03c

General Information:
Name(s) found: SPAC4G8.03c [Sanger Pombe]
Description(s) found:
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  • gi|2130430|pir||S62480 pumilio domain containing protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|19113974|ref|NP_593062.1| RNA-binding protein [Schizosaccharomyces pombe] [NCBI NR]
  • gi|1351595|sp|Q09829.1|YAD3_SCHPO RecName: Full=Pumilio domain-containing protein C4G8.03c [NCBI NR]
  • gi|1022348|emb|CAA91204.1| RNA-binding protein [Schizosaccharomyces pombe] [NCBI NR]
  • RNA-binding protein [Sanger Pombe]
  • Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe GN=SPAC4G8.03c PE=2 SV=1 [Swiss-Prot]
  • RNA-BINDING PROTEIN; PUMILIO FAMILY: Q09829; [pompepVF.fasta]
  • PUMILIO DOMAIN CONTAINING PROTEIN: Q09829; [pompepV13]
  • Hypothetical protein C4G8.03c in chromosome I [pompep4896]
  • |||RNA-binding protein [pompepnew.fasta]
  • |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • pumilio domain containing protein [Schizosaccharomyces pombe]gi|1022348|emb|CAA91204.1| SPAC4G8.03c [Schizosaccharomyces pombe]gi|1351595|sp|Q09829|YAD3_SCHPO Hypothetical protein C4G8.03c in chromosome Igi|2130430|pir||S62480 pumilio domain containing [nrdb_11152004_Chlamydomonas]
  • (Q09829) Hypothetical protein C4G8.03c in chromosome I [pompep4896_normal_reversed]
  • hypothetical protein SPAC4G8.03c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC4G8.03c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • |||RNA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 780 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article][ISSLink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay [ISSLink to PubMed article]
    Molecular Function: mRNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNRDAYNEL NLNKKSQETN RKPSPLSSYT SISRELDYAN QSPFSSNSFS PTELKARTSA  60
   61 TFDVRSASTS PINASDFHKY SHDPFQRLFK AKGNASFSKT KSFPSSVTYS PSEETFPLTS 120
  121 GMNKSVHEYP FTLSESAISS SHKSSIPERR NFDSSVSVSN PLLHWNNVDT LLRDGSLENV 180
  181 NNSRQDQFLP YKTFSSTISN SDFLHRESSF SSLIDEESKL ASLRNLNIND RPPLPVLKNS 240
  241 ERNLLHRQLL SNHPFFSQNN VSLSTNSKNY STDFTKIQSD SSLLQNRQQN HRIETDQLSH 300
  301 FPDHLDPSRI PSPYQPSSLQ PLESRKLHSK VDVHSKKLNA LSQLNPILRS ENVLQNDNHH 360
  361 SSLSMDNDPT NVSTKNRNNQ TVGEHPYVDD NKKKKKGPAK PKEKATLGKT VNSFFGSHST 420
  421 SNYSKVPLSA KLTGEKSDDL SNLLKNKGKK KSQDNQIPHL VGFLGHLSTI CKDQYGCRYL 480
  481 QKLLDENPKV NASLFFPEIR QSVVQLMIDP FGNYMCQKLF VYASREQKLS MLNGIGEGIV 540
  541 DICSNLYGTR SMQNIIDKLT SNEQISLLLK IIIPSLTTLA CDNNGTHVLQ KCIAKFPPEK 600
  601 LEPLFLSMEE NLITLATNRH GCCILQRCLD RTNGDIQERL VNSIIKSCLL LVQNAYGNYL 660
  661 VQHVLELNIQ PYTERIIEKF FGNICKLSLQ KFSSNAIEQC IRTASPSTRE QMLQEFLSFP 720
  721 NIEQLLDDCY ANYVMQRFLN VADESQKFLI LRSISHVIPK IQNTRHGRHI LAKLTSSTSS 780
  781

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..279] MSA 7.447995 View MSA. No confident structure predictions are available.
    2 View Details [280..437] MSA 1.436995 View MSA. No confident structure predictions are available.
    3 View Details [438..780] PSI-BLAST 133.0 Pumilio 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • RNA binding
    		•  2.11573661150436 bayes_pls_golite062009
  • binding
    		•  2.04462323043166 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.25530318108311 bayes_pls_golite062009
  • protein binding
    		•  1.04044934052933 bayes_pls_golite062009
  • mRNA binding
    		•  0.73831124805124 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.464230801825493 bayes_pls_golite062009
  • DNA binding
    		•  0.356030945125909 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0579816100130538 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle