| Protein: | SPAC4G8.03c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 780 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4G8.03c.
| Description | E-value | Query Range |
Subject Range |
|
|
474.0 | [0..5] | [780..242] |
|
|
473.0 | [0..443] | [777..2] |
|
|
471.0 | [0..23] | [777..247] |
|
|
470.0 | [0..17] | [777..292] |
|
Region A: Residues: [1-279] |
1 11 21 31 41 51
| | | | | |
1 MVNRDAYNEL NLNKKSQETN RKPSPLSSYT SISRELDYAN QSPFSSNSFS PTELKARTSA 60
61 TFDVRSASTS PINASDFHKY SHDPFQRLFK AKGNASFSKT KSFPSSVTYS PSEETFPLTS 120
121 GMNKSVHEYP FTLSESAISS SHKSSIPERR NFDSSVSVSN PLLHWNNVDT LLRDGSLENV 180
181 NNSRQDQFLP YKTFSSTISN SDFLHRESSF SSLIDEESKL ASLRNLNIND RPPLPVLKNS 240
241 ERNLLHRQLL SNHPFFSQNN VSLSTNSKNY STDFTKIQS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [280-437] |
1 11 21 31 41 51
| | | | | |
1 DSSLLQNRQQ NHRIETDQLS HFPDHLDPSR IPSPYQPSSL QPLESRKLHS KVDVHSKKLN 60
61 ALSQLNPILR SENVLQNDNH HSSLSMDNDP TNVSTKNRNN QTVGEHPYVD DNKKKKKGPA 120
121 KPKEKATLGK TVNSFFGSHS TSNYSKVPLS AKLTGEKS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [438-780] |
1 11 21 31 41 51
| | | | | |
1 DDLSNLLKNK GKKKSQDNQI PHLVGFLGHL STICKDQYGC RYLQKLLDEN PKVNASLFFP 60
61 EIRQSVVQLM IDPFGNYMCQ KLFVYASREQ KLSMLNGIGE GIVDICSNLY GTRSMQNIID 120
121 KLTSNEQISL LLKIIIPSLT TLACDNNGTH VLQKCIAKFP PEKLEPLFLS MEENLITLAT 180
181 NRHGCCILQR CLDRTNGDIQ ERLVNSIIKS CLLLVQNAYG NYLVQHVLEL NIQPYTERII 240
241 EKFFGNICKL SLQKFSSNAI EQCIRTASPS TREQMLQEFL SFPNIEQLLD DCYANYVMQR 300
301 FLNVADESQK FLILRSISHV IPKIQNTRHG RHILAKLTSS TSS
|
| Detection Method: | |
| Confidence: | 133.0 |
| Match: | 1ib2A |
| Description: | Pumilio 1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.11573661150436 | bayes_pls_golite062009 |
| binding | 2.04462323043166 | bayes_pls_golite062009 |
| nucleic acid binding | 1.25530318108311 | bayes_pls_golite062009 |
| protein binding | 1.04044934052933 | bayes_pls_golite062009 |
| mRNA binding | 0.73831124805124 | bayes_pls_golite062009 |
| transcription regulator activity | 0.464230801825493 | bayes_pls_golite062009 |
| DNA binding | 0.356030945125909 | bayes_pls_golite062009 |
| hydrolase activity | 0.0579816100130538 | bayes_pls_golite062009 |
