YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: trp2

General Information:
Name(s) found: trp2 / SPAC19A8.15 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • tryptophan synthase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 697 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: tryptophan biosynthetic process [ISSLink to PubMed article]
    Molecular Function: tryptophan synthase activity [ISSLink to PubMed article]
    pyridoxal phosphate binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQIKKTFL KAKEENKNVL VTFVTCGFPN VDETIKIMQG LQNGGAGIIE LGIPFSDAVA  60
   61 DGPTICKGNE IALKNNITLE KVFETVKLAR DAGVTIPIIL MGYYNPIFSY GDAKTIQKAK 120
  121 EVGANGFIIV DLPPEEAVGF REECKKQGVS FVPLVAPSTT DRRMELLASV ADSFIYVVSR 180
  181 MGSTGSSATG VINTALPQLC QRVRKFAGDT PLAVGFGVNT SEHFHQVGSV SDGVVVGSKI 240
  241 IDLILKAEPG TAATVVEEYC KYLTKEDPSA PVPKQFQSGG SVATAPPAAV VEPINEMYLP 300
  301 QKYGMFGGMY VPEALTQCLV ELESVFYKAL HDEKFWEEFR SYYEYMGRPS ALDYAKRLTE 360
  361 YCGGAHIWLK REDLNHGGSH KINNCIGQIL LAKRLGKNRI IAETGAGQHG VATAICAAKF 420
  421 GMKCTIYMGA EDCRRQALNV FRIRLLGAEV VPVTSGTQTL RDAVNEALKA WVEQIDTTHY 480
  481 LIGSAIGPHP FPTIVKTFQS VIGEETKAQM QEKRKKLPDA VVACVGGGSN SIGMFSPFKA 540
  541 DKSVMMLGCE AGGDGVDTPK HSATLTMGKV GVFHGVRTYV LQREDGQIQD THSISAGLDY 600
  601 PGVGPELSEL KYTNRAEFIA VTDAQCLEGF RALCHLEGII PALESSHAVY GGMELAKKLP 660
  661 KDKDIVITIS GRGDKDVQSV AEQLPILGPK IGWDLRF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..265] PSI-BLAST 79.522879 No description for 2ekcA was found.
    2 View Details [266..697] PSI-BLAST 122.0 X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.62092042588636 bayes_pls_golite062009
  • catalytic activity
    		•  2.38994231321972 bayes_pls_golite062009
  • lyase activity
    		•  1.87743897464083 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.42195744285403 bayes_pls_golite062009
  • binding
    		•  1.34539784687114 bayes_pls_golite062009
  • cysteine synthase activity
    		•  1.31641967296632 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  0.923824749425553 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.727838845253199 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.476674617721478 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.37325071016009 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.249761226675912 bayes_pls_golite062009
  • protein binding
    		•  0.044015703839169 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle