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Protein Overview: SPCC18.13

General Information:
Name(s) found: SPCC18.13 [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • tRNA (guanine-N7-)-methyltransferase subunit Trm82 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 421 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    protein complex [ISSLink to PubMed article]
    Biological Process: tRNA methylation [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQRVFKHP CQFLTWNSKH NYIVCCSGPY LLGFSCSTGE KIFEHCYRDN INEKHREAAA  60
   61 YGEAIRQVAF SKDYSRMATV SEDKCLRLWD STQPDKIELL YQKNIPKRCA DLCFAGSNEI 120
  121 VFGDKFGDVY CVDENWFTTS EVTEEKKSNV VEGKQEPVNN DTLKDSKLQK LEPIMGHVSI 180
  181 LTQLIVAQNP QNSKEEIIIT SDKDEHIRIS RFPNAFVIEG FCLGHEDFVS RMSLYDNRTL 240
  241 ISGGGDNHVF VWDLENFKCL DAFDLRSAFS TYLSLNQPMV VSVILPIFKR QLVAFACEGM 300
  301 AGLIFAKVTP EKRLLFHSAL KLSGPVLDAV LLDTDTDQIL ISLDSSFTFG ACFECVKFDE 360
  361 GNAAVLTKPD VIKRIESDGL ISTEKPFCPL AQIHTLRKNH SKFIRSVETG TSSPSVESKD 420
  421 N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..421] PSI-BLAST 35.39794 Actin interacting protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.83286470399158 bayes_pls_golite062009
    		• 1.56935945513861 bayes_pls_golite062009
  • RNA binding
    		•  1.50295916950465 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25687092973217 bayes_pls_golite062009
  • snoRNA binding
    		•  1.22055760394426 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.20712373307552 bayes_pls_golite062009
  • protein binding
    		•  0.969160695900395 bayes_pls_golite062009
  • ligase activity
    		•  0.93058496790047 bayes_pls_golite062009
  • DNA binding
    		•  0.711274653406079 bayes_pls_golite062009
  • histone methyltransferase activity
    		•  0.441825675082113 bayes_pls_golite062009
  • protein methyltransferase activity
    		•  0.246495665330495 bayes_pls_golite062009
  • transcription factor activity
    		•  0.243992994917491 bayes_pls_golite062009
  • N-methyltransferase activity
    		•  0.00335766408304172 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle