YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC18.13
Organism:	Schizosaccharomyces pombe
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC18.13.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	405.0	[0..1]	[421..1165]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	391.0	[0..1]	[421..1037]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	381.0	[0..14]	[420..900]
gi\|115443476, gi... - gi\|115443476\|ref\|XP_001218545.1\| hypothetical protein ATEG_09923 [Aspergillus terreus NIH2624], gi\|1...	378.0	[0..5]	[418..632]
gi\|35214926, gi\|... - gi\|37523920\|ref\|NP_927297.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	373.0	[0..12]	[420..599]
gi\|17225208 - gi\|17225208\|gb\|AAL37300.1\|AF323584_1 beta transducin-like protein HET-E2C*40 [Podospora anserina]	372.0	[0..15]	[416..836]

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Predicted Domain #1

Region A:
Residues: [1-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQRVFKHP CQFLTWNSKH NYIVCCSGPY LLGFSCSTGE KIFEHCYRDN INEKHREAAA  60
   61 YGEAIRQVAF SKDYSRMATV SEDKCLRLWD STQPDKIELL YQKNIPKRCA DLCFAGSNEI 120
  121 VFGDKFGDVY CVDENWFTTS EVTEEKKSNV VEGKQEPVNN DTLKDSKLQK LEPIMGHVSI 180
  181 LTQLIVAQNP QNSKEEIIIT SDKDEHIRIS RFPNAFVIEG FCLGHEDFVS RMSLYDNRTL 240
  241 ISGGGDNHVF VWDLENFKCL DAFDLRSAFS TYLSLNQPMV VSVILPIFKR QLVAFACEGM 300
  301 AGLIFAKVTP EKRLLFHSAL KLSGPVLDAV LLDTDTDQIL ISLDSSFTFG ACFECVKFDE 360
  361 GNAAVLTKPD VIKRIESDGL ISTEKPFCPL AQIHTLRKNH SKFIRSVETG TSSPSVESKD 420
  421 N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.39794
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.83286470399158	bayes_pls_golite062009
	1.56935945513861	bayes_pls_golite062009
RNA binding	1.50295916950465	bayes_pls_golite062009
transcription regulator activity	1.25687092973217	bayes_pls_golite062009
snoRNA binding	1.22055760394426	bayes_pls_golite062009
nucleic acid binding	1.20712373307552	bayes_pls_golite062009
protein binding	0.969160695900395	bayes_pls_golite062009
ligase activity	0.93058496790047	bayes_pls_golite062009
DNA binding	0.711274653406079	bayes_pls_golite062009
histone methyltransferase activity	0.441825675082113	bayes_pls_golite062009
protein methyltransferase activity	0.246495665330495	bayes_pls_golite062009
transcription factor activity	0.243992994917491	bayes_pls_golite062009
N-methyltransferase activity	0.00335766408304172	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: