Protein Overview: tbp1

General Information:
Name(s) found:	tbp1 / SPAC29E6.08 [Sanger Pombe]
Description(s) found: Found 25 descriptions. SHOW ALL	TATA-binding protein (TBP) [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	231 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] RNA polymerase I transcription factor complex [ISS] transcription factor TFIID complex [ISS] transcription factor TFIIIB complex [ISS]
Biological Process:	transcription initiation from RNA polymerase III promoter [ISS] transcription from RNA polymerase I promoter [ISS] regulation of transcription [IC] transcription initiation from RNA polymerase II promoter [ISS]
Molecular Function:	DNA binding [IEA] RNA polymerase I transcription factor activity [ISS] general RNA polymerase II transcription factor activity [ISS] RNA polymerase III transcription factor activity [ISS]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFALPTTAS QASAFMNNSS LTFPVLPNAN NEATNETADS GDAEVSKNEG VSGIVPTLQN  60
   61 IVATVNLDCR LDLKTIALHA RNAEYNPKRF AAVIMRIREP KSTALIFASG KMVVLGGKSE 120
  121 DDSKLASRKY ARIIQKLGFN AKFTDFKIQN IVGSCDVKFP IRLEGLAYSH GTFSSYEPEL 180
  181 FPGLIYRMVK PKVVLLIFVS GKIVLTGAKV REEIYQAFEA IYPVLSEFRK H

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

Term	Confidence	Notes
general RNA polymerase II transcription factor activity	10.1927670598446	bayes_pls_golite062009
RNA polymerase III transcription factor activity	8.4318102330583	bayes_pls_golite062009
transcription regulator activity	4.66773099672992	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.97397050058114	bayes_pls_golite062009
DNA binding	3.68758425895596	bayes_pls_golite062009
nucleic acid binding	3.4119217152884	bayes_pls_golite062009
binding	3.25203283623613	bayes_pls_golite062009
RNA polymerase I transcription factor activity	3.24777019705869	bayes_pls_golite062009
transcription factor activity	2.17821704710246	bayes_pls_golite062009
transcription factor binding	1.86204668268867	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	1.59579825271822	bayes_pls_golite062009
protein binding	0.938536348073543	bayes_pls_golite062009
transcription coactivator activity	0.312991469396539	bayes_pls_golite062009
transcription activator activity	0.199341831249925	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.88

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..231]	PSI-BLAST	84.522879	Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex

Protein Overview: tbp1

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: