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Protein Overview: SPAC23A1.12c

General Information:
Name(s) found: SPAC23A1.12c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • phenylalanine-tRNA ligase beta subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 589 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    phenylalanine-tRNA ligase complex [ICLink to PubMed article]
    Biological Process: phenylalanyl-tRNA aminoacylation [ISSLink to PubMed article]
    Molecular Function: magnesium ion binding [IEA]
    ATP binding [IEA]
    RNA binding [IEA]
    phenylalanine-tRNA ligase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTISCDKEE LYKALGREYT TQEFDELCFQ FGIELDEDTT NDPERSPSER PSLKIDIPAN  60
   61 RYDMLCLEGI AQALNVFNRR MATPQYKLLP STTSLTISPE TSEIRPYAAA AILRGVKLDP 120
  121 IRYQSFIALQ DKLHANLCRN RTLVAIGTHD FSVMEGPFTY EALKPEEINF VPLNQTQEIN 180
  181 GSNLLEFYKD SKHLSRYLHI IANSPRYPVI LDAKRRVCSL PPIINSEFSK ISVDTRDIFI 240
  241 DVTATDKTKL EIVVNMMTTM FSCYCEEPFT IEPVNIISEH NGCTRVTPNL NPTCFKADID 300
  301 YLNEACGLSL PEDEICHLLT RMMLTAKPNP NDSKTLLVYV PPLRADILHQ CDIMEDLGIA 360
  361 YGYDNLKHTY PAHSVTFGKP FEVNRLADII RNEVAYAGWS EVMPFILCSH DENYAWLRKT 420
  421 DDSKAVQLAN PKTLEFQVVR SSLLPGILKT VRENKNHALP IKIFEVSDVA FCDYSRERMT 480
  481 RNERHLCAIF AGLNSGFEQI HGLLDRVMLM LNTKRIMNPK DSDAVGYWIE AEDDSTFFPG 540
  541 RCAAVYYRKD FGTAGIRVGV FGVLHPLVLE KFELTSAASA VEIDLTLWV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 72.0 No description for 2cxiA was found.
    2 View Details [149..521] PSI-BLAST 5.045757 Structure of Staphylococcus aureus threonyl-tRNA synthetase complexed with an analogue of threonyl adenylate
    3 View Details [522..589] PSI-BLAST 60.39794 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • phenylalanine-tRNA ligase activity
    		•  13.8919118344182 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  12.5698315343202 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  12.5698315343202 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  12.5592545638101 bayes_pls_golite062009
  • ligase activity
    		•  6.92073480193262 bayes_pls_golite062009
  • glycine-tRNA ligase activity
    		•  2.61548498770105 bayes_pls_golite062009
  • threonine-tRNA ligase activity
    		•  2.18642354927 bayes_pls_golite062009
  • serine-tRNA ligase activity
    		•  2.07594942154162 bayes_pls_golite062009
  • catalytic activity
    		•  1.99372273395202 bayes_pls_golite062009
  • alanine-tRNA ligase activity
    		•  1.82594054955281 bayes_pls_golite062009
  • lysine-tRNA ligase activity
    		•  1.72324031407565 bayes_pls_golite062009
  • histidine-tRNA ligase activity
    		•  1.72215103383322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.973820663472435 bayes_pls_golite062009
  • binding
    		•  0.951197041515827 bayes_pls_golite062009
  • asparagine-tRNA ligase activity
    		•  0.921492123574877 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.864670700044417 bayes_pls_golite062009
  • DNA binding
    		•  0.621789297870471 bayes_pls_golite062009
  • transcription factor activity
    		•  0.265631643816467 bayes_pls_golite062009
  • aspartate-tRNA ligase activity
    		•  0.00572514744734753 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle