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Protein Overview: smf1

General Information:
Name(s) found: smf1 / SPBC3E7.14 [Sanger Pombe]
Description(s) found:
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  • gi|7493414|pir||T40388 small nuclear ribonucleoprotein F - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|6094210|sp|O59734.1|RUXF_SCHPO RecName: Full=Probable small nuclear ribonucleoprotein F; Short=snRNP-F; Short=Sm protein F; Short=Sm-F; Short=SmF [NCBI NR]
  • gi|3560134|emb|CAA20721.1| SPBC3E7.14 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|3130040|emb|CAA19017.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112893|ref|NP_596101.1| Sm snRNP core protein Smf1 [Schizosaccharomyces pombe] [NCBI NR]
  • Sm snRNP core protein Smf1 [Sanger Pombe]
  • Probable small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe GN=smf1 PE=2 SV=1 [Swiss-Prot]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN F; PUTATIVE PRE- MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMX3: O59734; [pompepVF.fasta]
  • SMALL NUCLEAR RIBONUCLEOPROTEIN F; PUTATIVE PRE-MRNA SPLICING FACTOR; SIMILAR TO S. CEREVISIAE SMX3: O59734; [pompepV13]
  • Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [pompep4896]
  • |smf1|SPBC4F6.01|small nuclear ribonucleoprotein F [pompepnew.fasta]
  • |smf1|SPBC4F6.01|small nuclear ribonucleoprotein (snRNP) (subunit F)|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • |smf1|SPBC4F6.01|small nuclear ribonucleoprotein |Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • small nuclear ribonucleoprotein F [Schizosaccharomyces pombe]gi|3560134|emb|CAA20721.1| SPBC4F6.01 [Schizosaccharomyces pombe]gi|3130040|emb|CAA19017.1| SPBC3E7.14 [Schizosaccharomyces pombe]gi|6094210|sp|O59734|RUXF_SCHPO Probable small nuclear ribonu [nrdb_11152004_Chlamydomonas]
  • (O59734) Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [pompep4896_normal_reversed]
  • |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • hypothetical protein SPBC3E7.14 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPBC3E7.14 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • Small nuclear ribonucleoprotein F OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=smf1 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 78 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    spliceosomal complex [ICLink to PubMed article]
    cytosol [IDALink to PubMed article]
    U1 snRNP [IDALink to PubMed article]
    Biological Process: RNA splicing, via transesterification reactions [ISSLink to PubMed article]
    nuclear mRNA 5'-splice site recognition [IC]
    nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: RNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFVPVNPKP FLQGLIGKPV LVRLKWGQEY KGTLQSVDSY MNLQLLNAEE LVDGVKTGDL  60
   61 GEILIRCNNV LWVGESTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..78] PSI-BLAST 16.154902 Archaeal homoheptameric Sm protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.44117021254507 bayes_pls_golite062009
  • protein binding
    		•  0.318488892917007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle