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Protein Overview: Tf2-8, Tf2-7

General Information:
Name(s) found: Tf2-8 / SPAC19D5.09c [Sanger Pombe]
Tf2-7 / SPAC13D1.01c [Sanger Pombe]
Description(s) found:
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  • gi|63054667|ref|NP_594898.2| retrotransposable element [Schizosaccharomyces pombe] [NCBI NR]
  • gi|28380135|sp|Q9C0R2.1|RTF22_SCHPO RecName: Full=Retrotransposable element Tf2 155 kDa protein type 2 [NCBI NR]
  • gi|19115809|ref|NP_594897.1| retrotransposable element [Schizosaccharomyces pombe] [NCBI NR]
  • gi|159884042|emb|CAC37431.2| retrotransposable element [Schizosaccharomyces pombe] [NCBI NR]
  • gi|13810242|emb|CAC37430.1| retrotransposable element [Schizosaccharomyces pombe] [NCBI NR]
  • gi|13445200|emb|CAC34940.1| SPAC19D5.09c [Schizosaccharomyces pombe] [NCBI NR]
  • retrotransposable element [Sanger Pombe]
  • Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1 [Swiss-Prot]
  • Retrotransposable element Tf2 155 kDa protein type 2 - Schizosaccharomyces pombe (Fission yeast) [Swiss-Prot]
  • RETROTRANSPOSABLE ELEMENT TF2-TYPE TRANSPOSON: Q9C0R2; [pompepVF.fasta]
  • RETROTRANSPOSABLE ELEMENT TF2-TYPE TRANSPOSON: Q9C0R2;Q9C119; [pompepVF.fasta]
  • Retrotransposable element Tf2 155 kDa protein type 2 [pompep4896]
  • |Tf2-8|SPAC19D5.09c|retrotransposable element [pompepnew.fasta]
  • |Tf2-7||retrotransposable element [pompepnew.fasta]
  • |Tf2-8|SPAC13D1.02c|retrotransposable element Tf2-type transposon|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • |Tf2-7||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • retrotransposable element Tf2-type transposon [Schizosaccharomyces pombe]gi|13445200|emb|CAC34940.1| retrotransposable element Tf2-type transposon [Schizosaccharomyces pombe]gi|13810242|emb|CAC37430.1| tf2-12 [Schizosaccharomyces pombe]gi|28380135|sp|Q [nrdb_11152004_Chlamydomonas]
  • |Tf2-8|SPAC13D1.02c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual [pompep2242005.fasta]
  • (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2 [pompep4896_normal_reversed]
  • hypothetical protein SPAC13D1.02 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC13D1.01 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC13D1.01 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPAC19D5.09c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 1333 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NASLink to PubMed article]
    cellular_component [ND]
    Biological Process: biological_process [ND]
    proteolysis [IEA]
    DNA integration [IEA]
    RNA-dependent DNA replication [IEA]
    Molecular Function: DNA binding [IEA]
    RNA-directed DNA polymerase activity [IEA][RCALink to PubMed article]
    RNA binding [IEA]
    aspartic-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYANYRYMK ARAKRWRPEN LDGIQTSDEH LINLFAKILS KHVPEIGKFD PNKDVESYIS  60
   61 KLDQHFTEYP SLFPNEHTKR QYTLNHLEEL EQQFAERMFS ENGSLTWQEL LRQTGKVQGS 120
  121 NKGDRLTKTF EGFRNQLDKV QFIRKLMSKA NVDDFHTRLF ILWMLPYSLR KLKERNYWKS 180
  181 EISEIYDFLE DKRTASYGKT HKRFQPQNKN LGKESLSKKN NTTNSRNLRK TNVSRIEYSS 240
  241 NKFLNHTRKR YEMVLQAELP DFKCSIPCLI DTGAQANIIT EETVRAHKLP TRPWSKSVIY 300
  301 GGVYPNKINR KTIKLNISLN GISIKTEFLV VKKFSHPAAI SFTTLYDNNI EISSSKHTLS 360
  361 QMNKVSNIVK EPELPDIYKE FKDITAETNT EKLPKPIKGL EFEVELTQEN YRLPIRNYPL 420
  421 PPGKMQAMND EINQGLKSGI IRESKAINAC PVMFVPKKEG TLRMVVDYKP LNKYVKPNIY 480
  481 PLPLIEQLLA KIQGSTIFTK LDLKSAYHLI RVRKGDEHKL AFRCPRGVFE YLVMPYGISI 540
  541 APAHFQYFIN TILGEVKESH VVCYMDNILI HSKSESEHVK HVKDVLQKLK NANLIINQAK 600
  601 CEFHQSQVKF IGYHISEKGF TPCQENIDKV LQWKQPKNRK ELRQFLGSVN YLRKFIPKTS 660
  661 QLTHPLNNLL KKDVRWKWTP TQTQAIENIK QCLVSPPVLR HFDFSKKILL ETDASDVAVG 720
  721 AVLSQKHDDD KYYPVGYYSA KMSKAQLNYS VSDKEMLAII KSLKHWRHYL ESTIEPFKIL 780
  781 TDHRNLIGRI TNESEPENKR LARWQLFLQD FNFEINYRPG SANHIADALS RIVDETEPIP 840
  841 KDSEDNSINF VNQISITDDF KNQVVTEYTN DTKLLNLLNN EDKRVEENIQ LKDGLLINSK 900
  901 DQILLPNDTQ LTRTIIKKYH EEGKLIHPGI ELLTNIILRR FTWKGIRKQI QEYVQNCHTC 960
  961 QINKSRNHKP YGPLQPIPPS ERPWESLSMD FITALPESSG YNALFVVVDR FSKMAILVPC1020
 1021 TKSITAEQTA RMFDQRVIAY FGNPKEIIAD NDHIFTSQTW KDFAHKYNFV MKFSLPYRPQ1080
 1081 TDGQTERTNQ TVEKLLRCVC STHPNTWVDH ISLVQQSYNN AIHSATQMTP FEIVHRYSPA1140
 1141 LSPLELPSFS DKTDENSQET IQVFQTVKEH LNTNNIKMKK YFDMKIQEIE EFQPGDLVMV1200
 1201 KRTKTGFLHK SNKLAPSFAG PFYVLQKSGP NNYELDLPDS IKHMFSSTFH VSHLEKYRHN1260
 1261 SELNYATIDE SDIGTILHIL EHKNREQVLY LNVKYISNLN PSTIMSGWTT LATALQADKA1320
 1321 IVNDYIKNNN LNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..197] deduced N/A No confident structure predictions are available.
    2 View Details [198..371] PSI-BLAST 25.69897 HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor
    3 View Details [372..922] PSI-BLAST 162.0 HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase
    4 View Details [923..1220] PSI-BLAST 70.221849 N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain
    5 View Details [1221..1333] FFAS03 1.31 Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle