| Protein: | Tf2-8, Tf2-7 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1333 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tf2-8, Tf2-7.
| Description | E-value | Query Range |
Subject Range |
|
|
1372.0 | [0..30] | [1323..311] |
|
|
1370.0 | [0..30] | [1323..55] |
|
Region A: Residues: [1-197] |
1 11 21 31 41 51
| | | | | |
1 MSYANYRYMK ARAKRWRPEN LDGIQTSDEH LINLFAKILS KHVPEIGKFD PNKDVESYIS 60
61 KLDQHFTEYP SLFPNEHTKR QYTLNHLEEL EQQFAERMFS ENGSLTWQEL LRQTGKVQGS 120
121 NKGDRLTKTF EGFRNQLDKV QFIRKLMSKA NVDDFHTRLF ILWMLPYSLR KLKERNYWKS 180
181 EISEIYDFLE DKRTASY
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [198-371] |
1 11 21 31 41 51
| | | | | |
1 GKTHKRFQPQ NKNLGKESLS KKNNTTNSRN LRKTNVSRIE YSSNKFLNHT RKRYEMVLQA 60
61 ELPDFKCSIP CLIDTGAQAN IITEETVRAH KLPTRPWSKS VIYGGVYPNK INRKTIKLNI 120
121 SLNGISIKTE FLVVKKFSHP AAISFTTLYD NNIEISSSKH TLSQMNKVSN IVKE
|
| Detection Method: | |
| Confidence: | 25.69897 |
| Match: | 1w5vA |
| Description: | HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [372-922] |
1 11 21 31 41 51
| | | | | |
1 PELPDIYKEF KDITAETNTE KLPKPIKGLE FEVELTQENY RLPIRNYPLP PGKMQAMNDE 60
61 INQGLKSGII RESKAINACP VMFVPKKEGT LRMVVDYKPL NKYVKPNIYP LPLIEQLLAK 120
121 IQGSTIFTKL DLKSAYHLIR VRKGDEHKLA FRCPRGVFEY LVMPYGISIA PAHFQYFINT 180
181 ILGEVKESHV VCYMDNILIH SKSESEHVKH VKDVLQKLKN ANLIINQAKC EFHQSQVKFI 240
241 GYHISEKGFT PCQENIDKVL QWKQPKNRKE LRQFLGSVNY LRKFIPKTSQ LTHPLNNLLK 300
301 KDVRWKWTPT QTQAIENIKQ CLVSPPVLRH FDFSKKILLE TDASDVAVGA VLSQKHDDDK 360
361 YYPVGYYSAK MSKAQLNYSV SDKEMLAIIK SLKHWRHYLE STIEPFKILT DHRNLIGRIT 420
421 NESEPENKRL ARWQLFLQDF NFEINYRPGS ANHIADALSR IVDETEPIPK DSEDNSINFV 480
481 NQISITDDFK NQVVTEYTND TKLLNLLNNE DKRVEENIQL KDGLLINSKD QILLPNDTQL 540
541 TRTIIKKYHE E
|
| Detection Method: | |
| Confidence: | 162.0 |
| Match: | 1lw0A |
| Description: | HIV RNase H (Domain of reverse transcriptase); HIV-1 reverse transcriptase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [923-1220] |
1 11 21 31 41 51
| | | | | |
1 GKLIHPGIEL LTNIILRRFT WKGIRKQIQE YVQNCHTCQI NKSRNHKPYG PLQPIPPSER 60
61 PWESLSMDFI TALPESSGYN ALFVVVDRFS KMAILVPCTK SITAEQTARM FDQRVIAYFG 120
121 NPKEIIADND HIFTSQTWKD FAHKYNFVMK FSLPYRPQTD GQTERTNQTV EKLLRCVCST 180
181 HPNTWVDHIS LVQQSYNNAI HSATQMTPFE IVHRYSPALS PLELPSFSDK TDENSQETIQ 240
241 VFQTVKEHLN TNNIKMKKYF DMKIQEIEEF QPGDLVMVKR TKTGFLHKSN KLAPSFAG
|
| Detection Method: | |
| Confidence: | 70.221849 |
| Match: | 1k6yA |
| Description: | N-terminal Zn binding domain of HIV integrase; Retroviral integrase, catalytic domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [1221-1333] |
1 11 21 31 41 51
| | | | | |
1 PFYVLQKSGP NNYELDLPDS IKHMFSSTFH VSHLEKYRHN SELNYATIDE SDIGTILHIL 60
61 EHKNREQVLY LNVKYISNLN PSTIMSGWTT LATALQADKA IVNDYIKNNN LNI
|
| Detection Method: | |
| Confidence: | 1.31 |
| Match: | 1pdqA |
| Description: | Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27. |
Matching Structure (courtesy of the PDB): |
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