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Protein Overview: rpn10

General Information:
Name(s) found: rpn10 / SPAC637.10c [Sanger Pombe]
Description(s) found:
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  • pir||T39002 26s proteasome regulatory chain s5a - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|4056554|emb|CAA22589.1| 19S proteasome regulatory subunit Rpn10 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19115540|ref|NP_594628.1| 19S proteasome regulatory subunit Rpn10 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|18202256|sp|O94444.1|RPN10_SCHPO RecName: Full=26S proteasome regulatory subunit rpn10 [NCBI NR]
  • 19S proteasome regulatory subunit Rpn10 [Sanger Pombe]
  • (O94444) 26S proteasome regulatory subunit rpn10 [Swiss-Prot]
  • 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1 [Swiss-Prot]
  • 19S PROTEASOME REGULATORY SUBUNIT: O94444; [pompepVF.fasta]
  • 26S proteasome regulatory subunit rpn10 [pompep4896]
  • |rpn10|pus1|19S proteasome regulatory subunit [pompepnew.fasta]
  • |pus1|rpn10|19S proteasome regulatory subunit|Schizosaccharomyces pombe|chr 1|||Manual [pombe041504.fasta]
  • 26s proteasome regulatory subunit; s5a [Schizosaccharomyces pombe]gi|4056554|emb|CAA22589.1| SPAC637.10c [Schizosaccharomyces pombe]gi|18202256|sp|O94444|RPNA_SCHPO 26S proteasome regulatory subunit rpn10gi|7489942|pir||T39002 26s proteasome regulatory [nrdb_11152004_Chlamydomonas]
  • |rpn10|pus1|19S proteasome regulatory subunit Rpn10|Schizosaccharomyces pombe|chr 1|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPAC637.10c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPAC637.10c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • 26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn10 PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 243 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    proteasome regulatory particle, base subcomplex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: DNA repair [IEA]
    negative regulation of protein catabolic process [IMPLink to PubMed article]
    regulation of cell cycle [RCALink to PubMed article]
    regulation of transcription [IEA]
    mitotic cell cycle [IC]
    ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    ubiquitin binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLEATMILI DNSEWMINGD YIPTRFEAQK DTVHMIFNQK INDNPENMCG LMTIGDNSPQ  60
   61 VLSTLTRDYG KFLSAMHDLP VRGNAKFGDG IQIAQLALKH RENKIQRQRI VAFVGSPIVE 120
  121 DEKNLIRLAK RMKKNNVAID IIHIGELQNE SALQHFIDAA NSSDSCHLVS IPPSPQLLSD 180
  181 LVNQSPIGQG VVASQNQFEY GVDPNLDVEL ALALELSMAE ERARQEVAAQ KSSEETEDKK 240
  241 MQE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..243] PSI-BLAST 18.154902 Integrin alpha-x beta2

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.02098822555334 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.82496592594463 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.72596563304893 bayes_pls_golite062009
  • binding
    		•  3.32950434867692 bayes_pls_golite062009
  • hydrolase activity
    		•  2.72944528058473 bayes_pls_golite062009
  • protein binding
    		•  1.4332924081006 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41389987484225 bayes_pls_golite062009
  • DNA binding
    		•  1.27751137443334 bayes_pls_golite062009
  • protein dimerization activity
    		•  0.45109468643752 bayes_pls_golite062009
  • protein complex binding
    		•  0.0341925447010603 bayes_pls_golite062009
  • protein heterodimerization activity
    		•  0.0195372592716698 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle