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Protein Overview: rpn9

General Information:
Name(s) found: rpn9 / SPAC607.05 [Sanger Pombe]
Description(s) found:
Found 16 descriptions.
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  • 19S proteasome regulatory subunit Rpn9 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: nucleus [TASLink to PubMed article]
    proteasome regulatory particle, lid subcomplex [ISSLink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [NASLink to PubMed article]
    regulation of mitotic cell cycle [IC]
    mitotic cell cycle [IC]
    ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTEMSVNMS DFLHDQATRA PESLQQSYIL MEDLYERKLW KQLTDALIVF FDTPETVPLR  60
   61 LPLYTNFVNS FRPNINQLKA VYMGLKAFES CSNDEALRNL NQIVNELDEE KYKDAYVYSI 120
  121 VAIARIKLIS GKLDEARELL VKASKIIDHI DYVESLIHSS YYSVSADYYK AKADYAQYYR 180
  181 HCLLYLSCID LDKCSHTELV ERAVDLSVAA ILGDIYNFGE LLLHPVFELL VGTQHEWLHD 240
  241 LVIAMNVGDL PLFERLMGQI NKMPLLQSSV ALLGQKIRLM ALIELVFQLP PNQRTLTFDT 300
  301 IARATRIPSN EVELLIMRAL SVGLITGVID EVTQIVTISS VQSRILNHSQ IASMESRLRE 360
  361 WNQNIKNLSN VVEISGKGVF V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] MSA 6.186992 View MSA. Confident ab initio structure predictions are available.
    2 View Details [186..263] MSA 1.236994 View MSA. No confident structure predictions are available.
    3 View Details [264..381] FFAS03 2.33 Solution structure of the PCI domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.45730892915196 bayes_pls_golite062009
  • binding
    		•  3.37660003833383 bayes_pls_golite062009
  • DNA binding
    		•  3.14200456972385 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.10521633426493 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53044123488453 bayes_pls_golite062009
  • hydrolase activity
    		•  2.37143167527915 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.81719906294261 bayes_pls_golite062009
  • transcription activator activity
    		•  1.74538136688763 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  1.48815906385664 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.914435149747979 bayes_pls_golite062009
  • protein binding
    		•  0.726445167461826 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.224432853777564 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.142921675412538 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.124542865343065 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle