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Protein Overview: rng3

General Information:
Name(s) found: rng3 / SPCC613.04c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • UCS-domain protein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 746 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    actomyosin contractile ring [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    actin filament [IDALink to PubMed article]
    Biological Process: cytokinesis, actomyosin contractile ring assembly [IMPLink to PubMed article]
    'de novo' cotranslational protein folding [IPILink to PubMed article]
    cellular protein localization [IGILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    myosin binding [ISSLink to PubMed article]
    mRNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHELSSTPQ IDLLNDILKN SVESNVFSDY QKKQIVTLIL KSKISTAIVL LSPKSTAASE  60
   61 WNYLCNLQDL HECVLCVDTI LPANLQTIAK RIFSLVLLPP LNDWCKQLRD AFLRFVSQPS 120
  121 ICPTDFPLKL FFLSTVGIEL LIVNEKIIPQ KTQKYLLYEL FSSPSSITAN EIARLCQEAN 180
  181 NRNYLLQSLT SATDARRAFL NNPNYRLLSA IIFQDGPSNL AFVLAKDCVL LARQPETIPV 240
  241 SFERMSSLLL MCLPSHPDFI SPEFCHEWTE LAERNGLQEE WLNILNTACN FKECRAIIHK 300
  301 ECSEFIKDNH TSRVAILISM KLAFQYQLSQ VIPTLKLLLQ SKVYDSVLLE ALRQSSTLGP 360
  361 VKQLIADDSC LLNNLSKLLL DTNISPLDAS SIATIIYNMC KFKITKSEHE RELNQLRNMA 420
  421 EASKTIDYKE DETAPTERRI QKILEYDILS KLFSAAKHYN SLNGLLAMIL VHMANYKLAR 480
  481 RKLVQIGALK FLTRQCFIQT QDSNAAFALA KILISVAPHS IFTKAFPSNR AIHPMSKLLS 540
  541 TNSADTEYPI LLGKFEVLLA LTNLASHDEE SRQAIVQECW RELDELIIET NPLIQRATTE 600
  601 LINNLSLSPY CLIKFIGDKD SDFENTRLHI VLALSDTEDT PTRLAACGIL VQITSVDEGC 660
  661 KKILSLQNDF NYIVRMLTDQ DEGIQHRGLV CICNIVYSKD QEIFNKFIKT PKAVETLRTY 720
  721 ITKQAALKEL QHEALVMIDS RLQGSK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..235] deduced N/A No confident structure predictions are available.
    2 View Details [236..746] PSI-BLAST 71.0 Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • actin binding
    		•  3.34487439883854 bayes_pls_golite062009
  • binding
    		•  2.91891696274037 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.61566088685247 bayes_pls_golite062009
  • protein transporter activity
    		•  2.56209426863971 bayes_pls_golite062009
  • protein binding
    		•  1.94427330399472 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.13208464017585 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  0.856755253686635 bayes_pls_golite062009
  • nuclear localization sequence binding
    		•  0.611068932532731 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.500493982824973 bayes_pls_golite062009
  • structural molecule activity
    		•  0.440301695287117 bayes_pls_golite062009
  • signal sequence binding
    		•  0.27824906981293 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.248376041999546 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.20813279031582 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.197447861665299 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.196910953077117 bayes_pls_golite062009
  • DNA binding
    		•  0.171056781378569 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle