| Protein: | rng3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 746 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rng3.
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..271] | [738..5] |
|
|
292.0 | [0..308] | [738..35] |
|
|
292.0 | [0..271] | [738..5] |
|
|
292.0 | [0..271] | [738..5] |
|
|
291.0 | [0..271] | [738..5] |
|
|
291.0 | [0..286] | [738..19] |
|
Region A: Residues: [1-235] |
1 11 21 31 41 51
| | | | | |
1 MTHELSSTPQ IDLLNDILKN SVESNVFSDY QKKQIVTLIL KSKISTAIVL LSPKSTAASE 60
61 WNYLCNLQDL HECVLCVDTI LPANLQTIAK RIFSLVLLPP LNDWCKQLRD AFLRFVSQPS 120
121 ICPTDFPLKL FFLSTVGIEL LIVNEKIIPQ KTQKYLLYEL FSSPSSITAN EIARLCQEAN 180
181 NRNYLLQSLT SATDARRAFL NNPNYRLLSA IIFQDGPSNL AFVLAKDCVL LARQP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [236-746] |
1 11 21 31 41 51
| | | | | |
1 ETIPVSFERM SSLLLMCLPS HPDFISPEFC HEWTELAERN GLQEEWLNIL NTACNFKECR 60
61 AIIHKECSEF IKDNHTSRVA ILISMKLAFQ YQLSQVIPTL KLLLQSKVYD SVLLEALRQS 120
121 STLGPVKQLI ADDSCLLNNL SKLLLDTNIS PLDASSIATI IYNMCKFKIT KSEHERELNQ 180
181 LRNMAEASKT IDYKEDETAP TERRIQKILE YDILSKLFSA AKHYNSLNGL LAMILVHMAN 240
241 YKLARRKLVQ IGALKFLTRQ CFIQTQDSNA AFALAKILIS VAPHSIFTKA FPSNRAIHPM 300
301 SKLLSTNSAD TEYPILLGKF EVLLALTNLA SHDEESRQAI VQECWRELDE LIIETNPLIQ 360
361 RATTELINNL SLSPYCLIKF IGDKDSDFEN TRLHIVLALS DTEDTPTRLA ACGILVQITS 420
421 VDEGCKKILS LQNDFNYIVR MLTDQDEGIQ HRGLVCICNI VYSKDQEIFN KFIKTPKAVE 480
481 TLRTYITKQA ALKELQHEAL VMIDSRLQGS K
|
| Detection Method: | |
| Confidence: | 71.0 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.34487439883854 | bayes_pls_golite062009 |
| binding | 2.91891696274037 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 2.61566088685247 | bayes_pls_golite062009 |
| protein transporter activity | 2.56209426863971 | bayes_pls_golite062009 |
| protein binding | 1.94427330399472 | bayes_pls_golite062009 |
| nucleic acid binding | 1.13208464017585 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 0.856755253686635 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 0.611068932532731 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.500493982824973 | bayes_pls_golite062009 |
| structural molecule activity | 0.440301695287117 | bayes_pls_golite062009 |
| signal sequence binding | 0.27824906981293 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.248376041999546 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.20813279031582 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.197447861665299 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.196910953077117 | bayes_pls_golite062009 |
| DNA binding | 0.171056781378569 | bayes_pls_golite062009 |
