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Protein Overview: SPBC16G5.02c

General Information:
Name(s) found: SPBC16G5.02c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • ribokinase [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 318 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][ISSLink to PubMed article]
    cytoplasm [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: D-ribose metabolic process [ISSLink to PubMed article]
    carbohydrate phosphorylation [ICLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    ribokinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIVVLGSM NTDLVMRTKI CPSGGETIHG EPDGFSTGNG GKGANQAVAV ARLSNPADTK  60
   61 VSMLGCVGDD AFGVEMLSGL KKDGVNVDNV KKIENKSTGV AMIIVEETGE NRILLSEGAN 120
  121 GNVDTAFVKA MEQRISTCNL LIMQLEIPLE AVEIALQIAH KHGVDVLMNP APAIPLSHDM 180
  181 ISYCAYLVPN EHEAAILLNQ ADSPATLENV DAYASKLLSF GVRKAVIITL GSQGAYYKSA 240
  241 NGESALVSAC KVKAVDTTAA GDTFIGAFSN SIAHGQPLKD SLEFAAKCSA ITVQRKGAAS 300
  301 SIPSLLEVDG SFNLKKNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..318] PSI-BLAST 61.045757 Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribokinase activity
    		•  4.13972810632318 bayes_pls_golite062009
  • carbohydrate kinase activity
    		•  3.53872211951287 bayes_pls_golite062009
  • kinase activity
    		•  2.44230326483029 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  2.43969902311075 bayes_pls_golite062009
  • transferase activity
    		•  2.15883296431019 bayes_pls_golite062009
  • phosphofructokinase activity
    		•  1.98381934960918 bayes_pls_golite062009
  • catalytic activity
    		•  1.74474587246986 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  1.01768986812996 bayes_pls_golite062009
  • binding
    		•  0.750579388499649 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.43271347210671 bayes_pls_golite062009
  • DNA binding
    		•  0.0886731070705062 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.0561488099067549 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle