YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC16G5.02c
Organism:	Schizosaccharomyces pombe
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC16G5.02c.

Description	E-value	Query Range	Subject Range
gi\|28203058, gi\|... - gi\|28210620\|ref\|NP_781564.1\| ribokinase [Clostridium tetani E88], gi\|28203058\|gb\|AAO35501.1\| ribokin...	268.0	[0..1]	[316..1]
gi\|52424338, gi\|... - gi\|52424338\|ref\|YP_087475.1\| RbsK protein [Mannheimia succiniciproducens MBEL55E], gi\|52306390\|gb\|AA...	258.0	[0..1]	[315..5]
gi\|91224727, gi\|... - gi\|91224727\|ref\|ZP_01259987.1\| ribokinase [Vibrio alginolyticus 12G01], gi\|91190273\|gb\|EAS76542.1\| r...	258.0	[0..1]	[315..1]
gi\|106882307, gi... - gi\|119944129\|ref\|YP_941809.1\| ribokinase [Psychromonas ingrahamii 37], gi\|119862733\|gb\|ABM02210.1\| r...	257.0	[0..1]	[314..1]
gi\|28809384, gi\|... - gi\|28900938\|ref\|NP_800593.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633], gi\|28809384\|dbj\|BAC6... gi\|28809384 - gi\|28809384\|dbj\|BAC62426.1\| ribokinase [Vibrio parahaemolyticus RIMD 2210633] gi\|149750024, gi... - gi\|153836675\|ref\|ZP_01989342.1\| ribokinase [Vibrio parahaemolyticus AQ3810], gi\|149750024\|gb\|EDM6076...	256.0	[0..1]	[315..1]
gi\|20515184, gi\|... - gi\|20806728\|ref\|NP_621899.1\| ribokinase family sugar kinase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806728 - gi\|20806728\|ref\|NP_621899.1\| Sugar kinase, ribokinase family [Thermoanaerobacter tengcongensis MB4] gi\|254478103, gi... - gi\|254478103\|ref\|ZP_05091486.1\| ribokinase [Carboxydibrachium pacificum DSM 12653], gi\|223490092\|ref...	256.0	[0..1]	[315..1]
gi\|254227589, gi... - gi\|75855471\|ref\|ZP_00763121.1\| COG0524: Sugar kinases, ribokinase family [Vibrio sp. Ex25], gi\|25422...	253.0	[0..1]	[315..1]
gi\|37200773, gi\|... - gi\|37676232\|ref\|NP_936628.1\| sugar kinase [Vibrio vulnificus YJ016], gi\|37200773\|dbj\|BAC96598.1\| sug...	253.0	[0..1]	[314..13]
gi\|27358090, gi\|... - gi\|27366524\|ref\|NP_762051.1\| ribokinase [Vibrio vulnificus CMCP6], gi\|27358090\|gb\|AAO07041.1\|AE01680...	251.0	[0..1]	[314..1]
gi\|227119309, gi... - gi\|75824935\|ref\|ZP_00754371.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae O395], gi\|... gi\|121630645, gi... - gi\|75815451\|ref\|ZP_00745959.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae V52], gi\|1... gi\|11356074 - pir\|\|D82497 ribokinase VCA0131 [imported] - Vibrio cholerae (strain N16961 serogroup O1) gi\|121586869, gi... - gi\|121586869\|ref\|ZP_01676650.1\| ribokinase [Vibrio cholerae 2740-80], gi\|121548912\|gb\|EAX58953.1\| ri... gi\|153221870, gi... - gi\|153221870\|ref\|ZP_01952735.1\| ribokinase [Vibrio cholerae MAK 757], gi\|124119363\|gb\|EAY38106.1\| ri... gi\|126511740, gi... - gi\|153817698\|ref\|ZP_01970365.1\| ribokinase [Vibrio cholerae NCTC 8457], gi\|126511740\|gb\|EAZ74334.1\| ... gi\|227010899, gi... - gi\|227811757\|ref\|YP_002811767.1\| ribokinase [Vibrio cholerae M66-2], gi\|227010899\|gb\|ACP07110.1\| rib... gi\|9657519, gi\|1... - gi\|9657519\|gb\|AAF96045.1\| ribokinase [Vibrio cholerae O1 biovar eltor str. N16961], gi\|15600902\|ref\|... gi\|75830920, gi\|... - gi\|75830920\|ref\|ZP_00760190.1\| COG0524: Sugar kinases, ribokinase family [Vibrio cholerae MO10], gi\|... gi\|229357053, gi... - gi\|229506702\|ref\|ZP_04396211.1\| ribokinase [Vibrio cholerae BX 330286], gi\|229357053\|gb\|EEO21971.1\| ... gi\|229352949, gi... - gi\|229510504\|ref\|ZP_04399984.1\| ribokinase [Vibrio cholerae B33], gi\|229352949\|gb\|EEO17889.1\| riboki... gi\|229345401, gi... - gi\|229517365\|ref\|ZP_04406810.1\| ribokinase [Vibrio cholerae RC9], gi\|229345401\|gb\|EEO10374.1\| riboki... gi\|229371661, gi... - gi\|229605175\|ref\|YP_002875879.1\| ribokinase [Vibrio cholerae MJ-1236], gi\|229371661\|gb\|ACQ62083.1\| r...	250.0	[0..1]	[314..1]

Back

Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIVVLGSM NTDLVMRTKI CPSGGETIHG EPDGFSTGNG GKGANQAVAV ARLSNPADTK  60
   61 VSMLGCVGDD AFGVEMLSGL KKDGVNVDNV KKIENKSTGV AMIIVEETGE NRILLSEGAN 120
  121 GNVDTAFVKA MEQRISTCNL LIMQLEIPLE AVEIALQIAH KHGVDVLMNP APAIPLSHDM 180
  181 ISYCAYLVPN EHEAAILLNQ ADSPATLENV DAYASKLLSF GVRKAVIITL GSQGAYYKSA 240
  241 NGESALVSAC KVKAVDTTAA GDTFIGAFSN SIAHGQPLKD SLEFAAKCSA ITVQRKGAAS 300
  301 SIPSLLEVDG SFNLKKNT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.045757
Match:	1vm7A
Description:	Crystal structure of Ribokinase (TM0960) from Thermotoga maritima at 2.15 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribokinase activity	4.13972810632318	bayes_pls_golite062009
carbohydrate kinase activity	3.53872211951287	bayes_pls_golite062009
kinase activity	2.44230326483029	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.43969902311075	bayes_pls_golite062009
transferase activity	2.15883296431019	bayes_pls_golite062009
phosphofructokinase activity	1.98381934960918	bayes_pls_golite062009
catalytic activity	1.74474587246986	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	1.01768986812996	bayes_pls_golite062009
binding	0.750579388499649	bayes_pls_golite062009
nucleic acid binding	0.43271347210671	bayes_pls_golite062009
DNA binding	0.0886731070705062	bayes_pls_golite062009
transcription regulator activity	0.0561488099067549	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: