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Protein Overview: SPBC13A2.04c

General Information:
Name(s) found: SPBC13A2.04c [Sanger Pombe]
Description(s) found:
Found 17 descriptions.
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  • PTR family peptide transporter [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 618 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    fungal-type vacuole [IDALink to PubMed article]
    plasma membrane [ISSLink to PubMed article]
    Biological Process: transmembrane transport [RCALink to PubMed article]
    dipeptide transport [ISSLink to PubMed article]
    tripeptide transport [ISSLink to PubMed article]
    Molecular Function: dipeptide transporter activity [ISSLink to PubMed article]
    transmembrane transporter activity [ISSLink to PubMed article]
    tripeptide transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIEEQITK SDSDFIISED QSYLSKEKKA DGSATINTAD EQSSTDELQK SMSTGVLVNG  60
   61 DLYPSPTEEE LATLPRVCGT IPWKAFIIII VELCERFAYY GLTVPFQNYM QFGPKDATPG 120
  121 ALNLGESGAD GLSNFFTFWC YVTPVGAALI ADQFLGRYNT IVCSAVIYFI GILILTCTAI 180
  181 PSVIDAGKSM GGFVVSLIII GLGTGGIKSN VSPLMAEQLP KIPPYVKTKK NGSKVIVDPV 240
  241 VTTSRAYMIF YWSINVGSLS VLATTSLEST KGFVYAYLLP LCVFVIPLII LAVSKRFYKH 300
  301 TPPSGSIFVR VGQVFFLAAQ NKFNLEKTKP SCTTTVGRVT LKDQWDDLFI DELKRALRAC 360
  361 KTFLFYPIYW VCYGQMTNNL ISQAGQMQTG NVSNDLFQAF DSIALIIFIP ICDNIIYPLL 420
  421 RKYNIPFKPI LRITLGFMFA TASMIYAAVL QAKIYQRGPC YANFTDTCVS NDISVWIQIP 480
  481 AYVLIAFSEI FASITGLEFA FTKAPPSMKS IITALFLFTN AFGAILSICI SSTAVNPKLT 540
  541 WMYTGIAVTA FIAGIMFWVC FHHYDAMEDE QNQLEFKRND ALTKKDVEKE VHDSYSMADE 600
  601 SQYNLEKATA EEEIMKST

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..618] PSI-BLAST 13.30103 Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.09176719149278 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.59744164024479 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  3.5865018981083 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.54194478414824 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.21266150105753 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  2.15783210522667 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.79369588808394 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  1.59419818573076 bayes_pls_golite062009
  • binding
    		•  1.26757615356623 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  1.22264637452409 bayes_pls_golite062009
  • polyol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • alcohol transmembrane transporter activity
    		•  0.924836669821548 bayes_pls_golite062009
  • glycerol transmembrane transporter activity
    		•  0.812001619402678 bayes_pls_golite062009
  • symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.74591237387473 bayes_pls_golite062009
  • cation:sugar symporter activity
    		•  0.143419068761182 bayes_pls_golite062009
  • sugar:hydrogen symporter activity
    		•  0.143419068761182 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle