YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPBC13A2.04c
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	80	0.93
Transmembrane Helix	81	102	0.62
Non-Cytoplasmic	103	134	0.70
Transmembrane Helix	135	151	0.80
Cytoplasmic	152	160	0.64
Transmembrane Helix	161	184	0.87
Non-Cytoplasmic	185	189	0.76
Transmembrane Helix	190	211	0.88
Cytoplasmic	212	247	0.86
Transmembrane Helix	248	267	0.84
Non-Cytoplasmic	268	272	0.86
Transmembrane Helix	273	294	0.91
Cytoplasmic	295	362	0.92
Transmembrane Helix	363	381	0.82
Non-Cytoplasmic	382	396	0.84
Transmembrane Helix	397	420	0.81
Cytoplasmic	421	429	0.93
Transmembrane Helix	430	450	0.92
Non-Cytoplasmic	451	478	0.91
Transmembrane Helix	479	501	0.89
Cytoplasmic	502	510	0.90
Transmembrane Helix	511	534	0.90
Non-Cytoplasmic	535	540	0.81
Transmembrane Helix	541	561	0.94
Cytoplasmic	562	618	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIEEQITK SDSDFIISED QSYLSKEKKA DGSATINTAD EQSSTDELQK SMSTGVLVNG  60
   61 DLYPSPTEEE LATLPRVCGT IPWKAFIIII VELCERFAYY GLTVPFQNYM QFGPKDATPG 120
  121 ALNLGESGAD GLSNFFTFWC YVTPVGAALI ADQFLGRYNT IVCSAVIYFI GILILTCTAI 180
  181 PSVIDAGKSM GGFVVSLIII GLGTGGIKSN VSPLMAEQLP KIPPYVKTKK NGSKVIVDPV 240
  241 VTTSRAYMIF YWSINVGSLS VLATTSLEST KGFVYAYLLP LCVFVIPLII LAVSKRFYKH 300
  301 TPPSGSIFVR VGQVFFLAAQ NKFNLEKTKP SCTTTVGRVT LKDQWDDLFI DELKRALRAC 360
  361 KTFLFYPIYW VCYGQMTNNL ISQAGQMQTG NVSNDLFQAF DSIALIIFIP ICDNIIYPLL 420
  421 RKYNIPFKPI LRITLGFMFA TASMIYAAVL QAKIYQRGPC YANFTDTCVS NDISVWIQIP 480
  481 AYVLIAFSEI FASITGLEFA FTKAPPSMKS IITALFLFTN AFGAILSICI SSTAVNPKLT 540
  541 WMYTGIAVTA FIAGIMFWVC FHHYDAMEDE QNQLEFKRND ALTKKDVEKE VHDSYSMADE 600
  601 SQYNLEKATA EEEIMKST