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Protein Overview: pam1

General Information:
Name(s) found: pam1 / SPAC22F8.06 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • 20S proteasome component beta 6 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 225 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][TASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    proteasome core complex, beta-subunit complex [ISSLink to PubMed article]
    Biological Process: proteasomal ubiquitin-dependent protein catabolic process [ISSLink to PubMed article]
    regulation of cell cycle [RCALink to PubMed article]
    mitotic cell cycle [IC]
    Molecular Function: endopeptidase activity [ISSLink to PubMed article]
    threonine-type endopeptidase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSQFDPYV QNGGTTVAIA GDGFAILAGD TRSVNGYNIN TRFQPRVHEV GDDLVIGASG  60
   61 FEADALALVK RIQQRIDLYH DNHERKMSAQ SCACMVRTLL YGKRFFPYYV YTTVAGIDKE 120
  121 GKGEIYSFDP VGSYEREWCR AGGSAANFIT PFLDNQVNLH NQYVPGSHGK ERKPRRLLKL 180
  181 EEAMKITTDA FTSAGERHIE VGDSVLVKII TKEGVETRII PLKKD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..225] PSI-BLAST 47.221849 Proteasome beta subunit (catalytic)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • endopeptidase activity
    		•  6.91642761177919 bayes_pls_golite062009
  • peptidase activity
    		•  6.84511694091156 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  6.5973571808298 bayes_pls_golite062009
  • hydrolase activity
    		•  4.47652590304822 bayes_pls_golite062009
  • threonine-type endopeptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • threonine-type peptidase activity
    		•  2.98214579292788 bayes_pls_golite062009
  • catalytic activity
    		•  1.19663085909195 bayes_pls_golite062009
  • binding
    		•  1.18139971903068 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.448212653390607 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle