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Protein Overview: pof8

General Information:
Name(s) found: pof8 / SPAC17G6.17 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • F-box protein Pof8 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 402 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    ubiquitin ligase complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process [ICLink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    protein binding, bridging [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVPRQLNVR KIKAFTGKEN NSIADGNNNK LKDEHYKHNE ASKEPSHSIS GGLMLNQQDR  60
   61 QLIEPLNPDF LSAVDSILEI YFHRERQKEK VHLAFLIQQD DFWKGIRPNP TQNNLKYALS 120
  121 YVTNALFHFD NSSHMVIRNE NIVLPLDIPL YDRIIYVEPV PATLSNKSLL LAGKLRKYLK 180
  181 EFLPYVDAIG TPEGYAFVIL YKKVDQSALS KLPVPPGWVL LTRKEWTNRE EKYFENQLHL 240
  241 VKASSSDVSN SSNSFPENRY PKLTKVEKQM TKSVSKTSQT DKDEDNLDFT KNLLTRIKNL 300
  301 HPLTNKSTIH SLLSYVFSRQ TQNIACEPMY IDYRKDETEA IIRWKTPLHA ETCINAFRTQ 360
  361 ERKQNSHDDI RAHRKKGSSR PFLIAELITG EEEKNYWRML KK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..277] deduced N/A No confident structure predictions are available.
    2 View Details [278..402] FFAS03 1.32 Lupus LA protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  4.43561246034545 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  4.39408082050061 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  3.85120824615514 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  3.19116367604486 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.0372165500396 bayes_pls_golite062009
  • binding
    		•  2.88749864706998 bayes_pls_golite062009
  • RNA binding
    		•  2.06552837244801 bayes_pls_golite062009
  • ligase activity
    		•  1.73418602894877 bayes_pls_golite062009
  • mRNA binding
    		•  0.880500251455587 bayes_pls_golite062009
  • hydrolase activity
    		•  0.548889083879905 bayes_pls_golite062009
  • protein binding
    		•  0.361619805766015 bayes_pls_golite062009
  • DNA binding
    		•  0.208935674354032 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.033524725075138 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle