| Protein: | pof8 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 402 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pof8.
| Description | E-value | Query Range |
Subject Range |
|
|
221.0 | [0..220] | [401..391] |
|
|
221.0 | [0..220] | [401..10] |
|
|
215.0 | [0..220] | [401..374] |
|
Region A: Residues: [1-277] |
1 11 21 31 41 51
| | | | | |
1 MFVPRQLNVR KIKAFTGKEN NSIADGNNNK LKDEHYKHNE ASKEPSHSIS GGLMLNQQDR 60
61 QLIEPLNPDF LSAVDSILEI YFHRERQKEK VHLAFLIQQD DFWKGIRPNP TQNNLKYALS 120
121 YVTNALFHFD NSSHMVIRNE NIVLPLDIPL YDRIIYVEPV PATLSNKSLL LAGKLRKYLK 180
181 EFLPYVDAIG TPEGYAFVIL YKKVDQSALS KLPVPPGWVL LTRKEWTNRE EKYFENQLHL 240
241 VKASSSDVSN SSNSFPENRY PKLTKVEKQM TKSVSKT
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [278-402] |
1 11 21 31 41 51
| | | | | |
1 SQTDKDEDNL DFTKNLLTRI KNLHPLTNKS TIHSLLSYVF SRQTQNIACE PMYIDYRKDE 60
61 TEAIIRWKTP LHAETCINAF RTQERKQNSH DDIRAHRKKG SSRPFLIAEL ITGEEEKNYW 120
121 RMLKK
|
| Detection Method: | |
| Confidence: | 1.32 |
| Match: | 1owxA |
| Description: | Lupus LA protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 4.43561246034545 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 4.39408082050061 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 3.85120824615514 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.19116367604486 | bayes_pls_golite062009 |
| nucleic acid binding | 3.0372165500396 | bayes_pls_golite062009 |
| binding | 2.88749864706998 | bayes_pls_golite062009 |
| RNA binding | 2.06552837244801 | bayes_pls_golite062009 |
| ligase activity | 1.73418602894877 | bayes_pls_golite062009 |
| mRNA binding | 0.880500251455587 | bayes_pls_golite062009 |
| hydrolase activity | 0.548889083879905 | bayes_pls_golite062009 |
| protein binding | 0.361619805766015 | bayes_pls_golite062009 |
| DNA binding | 0.208935674354032 | bayes_pls_golite062009 |
| transcription regulator activity | 0.033524725075138 | bayes_pls_golite062009 |
