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Protein Overview: php5

General Information:
Name(s) found: php5 / SPBC3B8.02 [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • CCAAT-binding factor complex subunit Php5 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 415 amino acids

    Gene Ontology:
    Cellular Component: CCAAT-binding factor complex [TASLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    chromatin [RCALink to PubMed article]
    Biological Process: regulation of carbohydrate metabolic process [ISSLink to PubMed article]
    positive regulation of transcription [IGILink to PubMed article]
    gene-specific transcription from RNA polymerase II promoter [RCALink to PubMed article]
    Molecular Function: DNA binding [ISSLink to PubMed article]
    transcription factor activity [TASLink to PubMed article]
    specific RNA polymerase II transcription factor activity [RCALink to PubMed article]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIPDSYSL KQGFPEGLGE YVDPSGNPNS QVRIGYGQDS VSRFQQPVPD VDPTAVNHYN  60
   61 ASAPIEVASP FDNVTQGLVG SDAQALAEYW QKTIDTLEHD DQAVKTLHLP LARIKKVMKT 120
  121 DDDVKNKMIS AEAPFLFAKG SEIFIAELTM RAWLHAKKNQ RRTLQRSDIA NAVSKSEMYD 180
  181 FLIDIISKDN NNSRASSSQA HMSATQVAAM GGMNGLQPFP TQAGLPNQGF PMPTGSQLPF 240
  241 SNQQSSQPSM QYSSHPSRMQ QMQDIDQSMY KQQRLGSEYP QLQMSDNSGN VNQMNMQRPV 300
  301 MVAPYMAEHL YRYPPTHLES GSSAFRLQSS PMGYQMPQFQ GNMRPNMQQS QMFDPSAYGM 360
  361 SRRPGSPRQF DQQQRLYSQP NAMMYQTQQG RQGNPMHQQF SQQQNPLSRY SQQPQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run ste13 No Comments Unpublished Data

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..97] deduced N/A No confident structure predictions are available.
    2 View Details [98..199] PSI-BLAST 27.39794 Nuclear transcription factor Y subunit gamma (Nf-Yc2)
    3 View Details [200..415] MSA 3.140997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle