YRC Public Data Repository - Protein Structure Prediction

Protein:	php5
Organism:	Schizosaccharomyces pombe
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for php5.

Description	E-value	Query Range	Subject Range
gi\|14577940 - gi\|14577940\|gb\|AAK68863.1\| CCAAT-binding protein subunit HAP5 [Hypocrea jecorina]	181.0	[0..32]	[301..2]
gi\|3059251 - gi\|3059251\|dbj\|BAA25636.1\| HAPE [Aspergillus oryzae] gi\|220694864, gi... - gi\|238493956\|ref\|XP_002378214.1\| CCAAT-binding factor complex subunit HapE [Aspergillus flavus NRRL3...	181.0	[0..37]	[301..15]
gi\|32967225 - gi\|32967225\|gb\|AAP92405.1\| HapE [Aspergillus niger]	180.0	[0..32]	[301..2]
gi\|85084036 - gi\|85084036\|ref\|XP_957240.1\| hypothetical protein ( (AF026550) CCAAT-binding transcription factor su... gi\|32403178, gi\|... - gi\|32403178\|ref\|XP_322202.1\| hypothetical protein ( (AF026550) CCAAT-binding transcription factor su...	177.0	[0..32]	[301..2]
gi\|26347857 - gi\|26347857\|dbj\|BAC37577.1\| unnamed protein product [Mus musculus]	176.0	[0..55]	[250..5]
gi\|67540644, gi\|... - gi\|67540644\|ref\|XP_664096.1\| hypothetical protein AN6492.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	174.0	[0..39]	[302..17]
NFYB_CHICK - Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2	173.0	[0..55]	[260..3]
gi\|159122333 - gi\|159122333\|gb\|EDP47454.1\| CCAAT-binding factor complex subunit HapE [Aspergillus fumigatus A1163] gi\|66845174, gi\|... - gi\|70984052\|ref\|XP_747547.1\| CCAAT-binding factor complex subunit HapE [Aspergillus fumigatus Af293]...	171.0	[0..37]	[302..15]
gi\|46111453, gi\|... - gi\|46111453\|ref\|XP_382784.1\| hypothetical protein FG02608.1 [Gibberella zeae PH-1], gi\|42544585\|gb\|E...	170.0	[0..34]	[301..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIPDSYSL KQGFPEGLGE YVDPSGNPNS QVRIGYGQDS VSRFQQPVPD VDPTAVNHYN  60
   61 ASAPIEVASP FDNVTQGLVG SDAQALAEYW QKTIDTL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [98-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EHDDQAVKTL HLPLARIKKV MKTDDDVKNK MISAEAPFLF AKGSEIFIAE LTMRAWLHAK  60
   61 KNQRRTLQRS DIANAVSKSE MYDFLIDIIS KDNNNSRASS SQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.39794
Match:	1n1jB
Description:	Nuclear transcription factor Y subunit gamma (Nf-Yc2)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [200-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHMSATQVAA MGGMNGLQPF PTQAGLPNQG FPMPTGSQLP FSNQQSSQPS MQYSSHPSRM  60
   61 QQMQDIDQSM YKQQRLGSEY PQLQMSDNSG NVNQMNMQRP VMVAPYMAEH LYRYPPTHLE 120
  121 SGSSAFRLQS SPMGYQMPQF QGNMRPNMQQ SQMFDPSAYG MSRRPGSPRQ FDQQQRLYSQ 180
  181 PNAMMYQTQQ GRQGNPMHQQ FSQQQNPLSR YSQQPQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits