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Protein Overview: obr1

General Information:
Name(s) found: obr1 / SPAC3C7.14c [Sanger Pombe]
Description(s) found:
Found 21 descriptions.
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  • ubiquitinated histone-like protein Uhp1 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 202 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][NASLink to PubMed article]
    cytosol [IDALink to PubMed article]
    chromatin [RCALink to PubMed article]
    Biological Process: cellular response to stress [IEPLink to PubMed article]
    response to brefeldin A [IMPLink to PubMed articleLink to PubMed article]
    chromatin silencing at silent mating-type cassette [IGILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed article]
    FMN binding [IEA]
    histone binding [IPILink to PubMed article]
    oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTANTVAIV IYSTYGHVVK LAEAEKAGIE KAGGKAVIYQ FPETLSPEIL EKMHAAPKPN  60
   61 YPVVTLDVLT QYDAFLFGYP TRYGTPPAQF RTFWDSTGGL WVQGALHGKY FGQFFSTGTL 120
  121 GGGQESTALT AMTSFVHHGM IFVPLGYKNT FSLMANVESI HGGSSWGAGS YAGADGSRNV 180
  181 SDDELEIARI QGETFFKTVF RK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run dam1 No Comments Liu X, et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] PSI-BLAST 42.69897 The crystal structure of the Trp repressor binding protein WrbA from Pseudomonas aeruginosa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription regulator activity
    		•  2.32880196921974 bayes_pls_golite062009
  • binding
    		•  1.54529414520518 bayes_pls_golite062009
  • oxidoreductase activity
    		•  1.2698167260481 bayes_pls_golite062009
  • catalytic activity
    		•  0.275631658558537 bayes_pls_golite062009
  • protein binding
    		•  0.191220795572558 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0852528568191628 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle